Pairwise Alignments

Query, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

 Score =  546 bits (1407), Expect = e-160
 Identities = 289/462 (62%), Positives = 346/462 (74%), Gaps = 11/462 (2%)

Query: 1   MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60
           M F++LGLSAP+ KA+ E+GY+TPSPIQ QAIPAVL GKDVMAAAQTGTGKTAGFTLP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  ELLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKL 120
           ELLAKG K ++ Q RAL+LTPTRELAAQ+ ++V  YG++LPL+SAVVFGGV INPQ+ ++
Sbjct: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120

Query: 121 RHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180
             G D+LVATPGRL+DL  QNAVKF+QLEILVLDEADRMLDMGFIRDI KIL LLP KRQ
Sbjct: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180

Query: 181 NLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQLIKQ 240
           NL+FSATFS EIRELAKGLVN+PVEISV+P N+ A TV+Q I P D  +K  +L++L+K+
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240

Query: 241 ENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVAT 300
            NWQQVLVF RTKHGANRLA  L +  ++AAAIHGNKSQGART+ALADFK+GEVR+LVAT
Sbjct: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300

Query: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIER 360
           DIAARG+DI QLPQVVNF+LP + EDYVHRIGRTGRAG  G+A+SLVS+ E   L  IER
Sbjct: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360

Query: 361 LINRVLERQEVEGFSPVHALPETTLNPQGKDTKVKAVANHRKHRSAGKPAPRSGSGRDTQ 420
           L   +L R  + GF P + LPE+ L     DT+        K +   KP    G+G +  
Sbjct: 361 LTQALLPRVNLAGFEPTNQLPESKL-----DTR------PLKPKKPKKPKKVEGAGENKG 409

Query: 421 GNRENSQRQNSASSRNSNEHNNTEAAVARSPKPKSKHPQRDG 462
              EN  +               +      PK  +K P R+G
Sbjct: 410 SVAENKPKAGHRGQPTGQARTAKKGGTHSEPKKPTKRPVRNG 451