Pairwise Alignments

Query, 324 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 377 a.a., Diguanylate cyclase (GGDEF domain) with GAF sensor from Xanthomonas campestris pv. campestris strain 8004

 Score =  146 bits (369), Expect = 7e-40
 Identities = 95/274 (34%), Positives = 135/274 (49%), Gaps = 10/274 (3%)

Query: 5   PIPDNELQRLSTLKALNILDTNAEERFDRITRLTRRIFALPICVVTLVDASRQWFKSCQG 64
           P P NE  RL+ L + NILDT  E  +D IT    ++   P+ +++L+D  RQWFKS  G
Sbjct: 47  PPPANEDDRLAALHSYNILDTAPEPLYDDITAAAAQLCRTPMALISLIDQDRQWFKSRVG 106

Query: 65  LEVTETSRDISFCGHAI-NHDGIFIVNDAQMDPRFHDNPLVTQSPHIRFYAGYPLTIRGE 123
           ++  ET RD++FC HAI   D +  V D  +DPRF  N LVT  P IRFYAG PL     
Sbjct: 107 MQPAETPRDLAFCAHAILQPDQMMEVGDTFVDPRFARNALVTGGPQIRFYAGAPLLTSDG 166

Query: 124 YRVGTLCLIGNEPREFSADDIETLTDLGQMV-------EAELLSISLNTLDPLTMISNRR 176
             +GTLC++   PR  S  +   L  L + V       +A  L       DPLT + NR 
Sbjct: 167 VALGTLCVLDRAPRTLSDAERTALQALARQVVTTIELRQAARLLEGDALRDPLTDLWNRE 226

Query: 177 GFEQLAFQSLASCRRTNSQAALVFFDLDFFKELNDSFGHRKGDQVLYDFAHLLMAAFRES 236
           G E +  +  A   + +   A V  ++D FK L   FG    D  L   A  +    +E 
Sbjct: 227 GLEHM-LEDAAPVAKLHG-LAFVLIEIDGFKRLKLQFGSDAADATLVQAARCIETEPQEP 284

Query: 237 DVIARLGGDEFVVLLSFVKIDAVHVAIERFQSLL 270
             +AR+G   F ++L          +++R Q+ +
Sbjct: 285 GGVARIGAAHFCMVLPGADSAQALASVQRLQTTI 318