Pairwise Alignments

Query, 324 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 732 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) from Pseudomonas syringae pv. syringae B728a

 Score =  138 bits (348), Expect = 4e-37
 Identities = 76/177 (42%), Positives = 106/177 (59%), Gaps = 3/177 (1%)

Query: 1   MQLPPIPDNELQRLSTLKALNILDTNAEERFDRITRLTRRIFALPICVVTLVDASRQWFK 60
           M   P+ D++ +R+  L A +++DT  E  +D+I ++  RIF LPI +++LV   RQ+FK
Sbjct: 1   MNTYPVGDDDEERIRILNAFSLMDTPPEHEYDQIVQMASRIFDLPIVLISLVHRDRQFFK 60

Query: 61  SCQGLEVTETSRDISFCGHAINHDGIFIVNDAQMDPRFHDNPLVTQSPHIRFYAGYPLTI 120
           +  GL+V ET RD+SFC  A+    +F+V DA  D RF  N LV  +PHIRFYAG PL  
Sbjct: 61  ARVGLDVCETGRDVSFCNFALMGRNVFLVPDALQDERFSSNALVVGAPHIRFYAGAPLIT 120

Query: 121 RGEYRVGTLCLIGNEPRE-FSADDIETLTDLGQMV--EAELLSISLNTLDPLTMISN 174
              + +G+LCLI N+PRE FS  D   L DL  M+    EL  ++L   D  T   N
Sbjct: 121 ASGHVLGSLCLIDNKPRETFSERDQLVLQDLAVMIIERMELRRLTLENEDSHTRFMN 177



 Score = 69.7 bits (169), Expect = 2e-16
 Identities = 55/173 (31%), Positives = 90/173 (52%), Gaps = 8/173 (4%)

Query: 147 LTDLGQMVEAELLSISLNTLDPLTMISNRRGFEQLAFQSLASCRRTNSQAALVFFDLDFF 206
           + D+ Q VEA+ L       D LT ++NR   ++   ++  +       AA++  DLD F
Sbjct: 283 IRDITQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEACDA----QLSAAILLIDLDGF 338

Query: 207 KELNDSFGHRKGDQVLYDFAHLLMAAFRESDVIARLGGDEFVVLLSFV--KIDAVHVAIE 264
           K++ND+ GH  GD VL   +H L        +++RLGGDEFVV LS       A+ + +E
Sbjct: 339 KDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGGDEFVVFLSETADPDKAIKLGLE 398

Query: 265 RFQSLLEQYNQQHPQQPTLVSSIGVAHWSPELDINLEDLLDAADRAMYQDKAE 317
              +++E+  +       + +SIGV+      D + E +L  AD A+YQ K++
Sbjct: 399 LI-AVIEEPIEFEDNSIYIGASIGVSVRCGS-DYDEEQMLGNADLALYQAKSD 449