Pairwise Alignments

Query, 324 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 324 a.a., GGDEF domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  129 bits (323), Expect = 1e-34
 Identities = 81/248 (32%), Positives = 126/248 (50%), Gaps = 20/248 (8%)

Query: 79  HAINHDGIFIVNDAQMDPRFHDNPLVTQSPHIRFYAGYPLTIRGEYRVGTLCLIGNEPRE 138
           + +  + +  V DA  DPR+HDNP   Q  H   Y G P+        GTLC++ +   +
Sbjct: 77  YVVQKNQLLYVPDASQDPRWHDNPEF-QDDHYISYLGMPIIWPDGDTFGTLCVLSDVVTQ 135

Query: 139 FSADDIETLTDLGQMVEAELLS-------ISLNTLDPLTMISNRRGFEQLAFQSLASCRR 191
           + A  ++ L  +  ++ A+L         ++ + LDPLT I NRRGFE+L  ++     R
Sbjct: 136 YPATYLKVLNVIRDVINADLAHMYRENQLLNQSYLDPLTKIYNRRGFEELFEKNQQLALR 195

Query: 192 TNSQAALVFFDLDFFKELNDSFGHRKGDQVLYDFAHLLMAAFRESDVIARLGGDEFVVLL 251
              +  L+ FDLD FK +ND++GH  GD++L  FA  L ++ R SD++AR GGDEF+VL 
Sbjct: 196 LGRKMVLISFDLDGFKPINDNYGHITGDKILAFFATSLKSSCRGSDLVARWGGDEFLVL- 254

Query: 252 SFVKIDAVHVAIERFQS----LLEQYNQQHPQQPTLVSSIGVAHWSPELDINLEDLLDAA 307
                   H   E+ ++     L+++     Q P    S+G+    P     L+ LL + 
Sbjct: 255 -------AHSETEQLENSVLLRLDEHLAHQNQLPKFDYSVGMLQLDPATHYELDSLLPSV 307

Query: 308 DRAMYQDK 315
           D  MY  K
Sbjct: 308 DARMYHHK 315