Pairwise Alignments

Query, 324 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 709 a.a., EAL domain-containing protein from Pantoea sp. MT58

 Score =  112 bits (280), Expect = 3e-29
 Identities = 55/133 (41%), Positives = 81/133 (60%), Gaps = 1/133 (0%)

Query: 23  LDTNAEERFDRITRLTRRIFALPICVVTLVDASRQWFKSCQGLEVTETSRDISFCGHAIN 82
           +D+   +  DR+T L  R+F +P+  V+L+D  RQ+F S  GL ++ TSR+++FC H + 
Sbjct: 1   MDSPPTDALDRLTTLAARLFRVPVAFVSLIDEKRQFFASRYGLNISGTSRNVAFCHHTLA 60

Query: 83  HDGIFIVNDAQMDPRFHDNPLVTQSPHIRFYAGYPLTIRGEYRVGTLCLIGNEPRE-FSA 141
              I  V D   DPRF D+PLV   P IRFYAG PL+    + +GT+CL    PRE  +A
Sbjct: 61  QGEILCVPDTLKDPRFRDSPLVHGYPFIRFYAGIPLSTPDGHHIGTVCLTDTHPREPLTA 120

Query: 142 DDIETLTDLGQMV 154
           +D + L D+  +V
Sbjct: 121 EDRKHLADIAALV 133



 Score = 76.3 bits (186), Expect = 2e-18
 Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 6/170 (3%)

Query: 147 LTDLGQMVEAELLSISLNTLDPLTMISNRRGFEQLAFQSLASCRRTNSQAALVFFDLDFF 206
           + D+    E+E     L ++D LT +++R  F       +    +      L+  DLD F
Sbjct: 261 IRDVTARYESEARLCELASIDMLTRLASRSAF----MDQVGQLTKAAVPYTLLMTDLDGF 316

Query: 207 KELNDSFGHRKGDQVLYDFAHLLMAAFRESDVIARLGGDEFVVLLSFVKIDAVHVAIERF 266
           KE+ND+ GH  GD +L   A  + A    +   ARLGGDEFV+LL+    +A  +  ER 
Sbjct: 317 KEVNDTLGHAAGDALLCHVAEQIRAVCASAVTAARLGGDEFVILLAGGSAEAA-ITAERL 375

Query: 267 QSLLEQYNQQHPQQPTLVSSIGVAHWSPELDINLEDLLDAADRAMYQDKA 316
            + ++   + H     + +S G+A + PE   +   ++ AAD A+Y+ KA
Sbjct: 376 IAAVQTPFRYHDSPVVVGASTGIASY-PEHGRDPSSVMSAADLALYRAKA 424