Pairwise Alignments

Query, 324 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 326 a.a., diguanylate cyclase with GAF sensor from Paraburkholderia bryophila 376MFSha3.1

 Score =  332 bits (852), Expect = 6e-96
 Identities = 172/315 (54%), Positives = 215/315 (68%)

Query: 1   MQLPPIPDNELQRLSTLKALNILDTNAEERFDRITRLTRRIFALPICVVTLVDASRQWFK 60
           M LPPIP NE  RL TL+ALNILDT+ EERFDR+TRL +R+F +PI +V+LVDA RQWFK
Sbjct: 1   MHLPPIPGNESTRLETLRALNILDTSPEERFDRLTRLAKRLFGVPIALVSLVDADRQWFK 60

Query: 61  SCQGLEVTETSRDISFCGHAINHDGIFIVNDAQMDPRFHDNPLVTQSPHIRFYAGYPLTI 120
           SC GL  +ETSRD+SFC HAI  D I  V D   D RFHDNPLVT+SP+IRFYAG PLT+
Sbjct: 61  SCVGLSASETSRDVSFCAHAIVSDEILTVPDTLADDRFHDNPLVTESPNIRFYAGCPLTV 120

Query: 121 RGEYRVGTLCLIGNEPREFSADDIETLTDLGQMVEAELLSISLNTLDPLTMISNRRGFEQ 180
               ++GTLCLI  +PRE   ++ E L DL +M E EL ++ L TLD LT++SNRRGF  
Sbjct: 121 PNGSKLGTLCLIDVKPRELDDEERELLRDLARMAEQELAAVQLATLDDLTLLSNRRGFSA 180

Query: 181 LAFQSLASCRRTNSQAALVFFDLDFFKELNDSFGHRKGDQVLYDFAHLLMAAFRESDVIA 240
           LA  +L  C+R N  A+L+FFDL+ FK++ND+FGH +GD+ L  FA +L  A RESDVI 
Sbjct: 181 LAQHALNVCKRLNKPASLLFFDLNDFKQINDTFGHAEGDRALKTFADILRTALRESDVIG 240

Query: 241 RLGGDEFVVLLSFVKIDAVHVAIERFQSLLEQYNQQHPQQPTLVSSIGVAHWSPELDINL 300
           RLGGDEFV LLS     A     ER   LL++ N Q  +   +  S+G   +      ++
Sbjct: 241 RLGGDEFVALLSDADEAATREVTERLTHLLDERNAQDQRGYRIRFSVGQIQYDAGRHGSI 300

Query: 301 EDLLDAADRAMYQDK 315
            +LL AAD AMY  K
Sbjct: 301 AELLTAADAAMYSHK 315