Pairwise Alignments

Query, 324 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 322 a.a., diguanylate cyclase with GAF sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  535 bits (1377), Expect = e-157
 Identities = 259/323 (80%), Positives = 297/323 (91%), Gaps = 1/323 (0%)

Query: 1   MQLPPIPDNELQRLSTLKALNILDTNAEERFDRITRLTRRIFALPICVVTLVDASRQWFK 60
           MQLPP+P+NELQRL+TL+ALN+LDT+AEERFDRITRLTRRIF+LPIC+VTLVDA+RQWFK
Sbjct: 1   MQLPPVPENELQRLATLRALNVLDTDAEERFDRITRLTRRIFSLPICLVTLVDANRQWFK 60

Query: 61  SCQGLEVTETSRDISFCGHAINHDGIFIVNDAQMDPRFHDNPLVTQSPHIRFYAGYPLTI 120
           S QG+EV +T RDIS C HAINHDGIF+V+DA  DPRF DNPLVT+ PHIRFY GYPLTI
Sbjct: 61  SRQGIEVEQTPRDISLCAHAINHDGIFVVHDALKDPRFCDNPLVTEPPHIRFYVGYPLTI 120

Query: 121 RGEYRVGTLCLIGNEPREFSADDIETLTDLGQMVEAELLSISLNTLDPLTMISNRRGFEQ 180
           +GEYRVGTLCLIGNEPR+F+ +D ETLTDLGQMVEAELLSI+ NTLDPLTMISNRRGFE 
Sbjct: 121 QGEYRVGTLCLIGNEPRDFTEEDAETLTDLGQMVEAELLSIAQNTLDPLTMISNRRGFEL 180

Query: 181 LAFQSLASCRRTNSQAALVFFDLDFFKELNDSFGHRKGDQVLYDFAHLLMAAFRESDVIA 240
           LA+QSLASCRRT+++AALVFFDLDFFKE+NDSFGHRKGDQ+LYDFAH+LMAAFRESDVIA
Sbjct: 181 LAYQSLASCRRTDAEAALVFFDLDFFKEVNDSFGHRKGDQLLYDFAHILMAAFRESDVIA 240

Query: 241 RLGGDEFVVLLSFVKIDAVHVAIERFQSLLEQYNQQHPQQPTLVSSIGVAHWSPELDINL 300
           RLGGDEFVVLLSF++ D V+ AIERF+ LL +YNQQH + P L +SIG+AHWSP  D+NL
Sbjct: 241 RLGGDEFVVLLSFIERDTVNFAIERFKLLLGEYNQQHSEHP-LETSIGIAHWSPASDMNL 299

Query: 301 EDLLDAADRAMYQDKAEHHLNKP 323
           +DLLDAADRAMY+DKA HHL+KP
Sbjct: 300 DDLLDAADRAMYRDKAVHHLDKP 322