Pairwise Alignments

Query, 324 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 325 a.a., diguanylate cyclase with GAF sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  133 bits (335), Expect = 5e-36
 Identities = 98/311 (31%), Positives = 151/311 (48%), Gaps = 17/311 (5%)

Query: 15  STLKALNILDTNAEERFDRITRLTRRIFALPICVVTLVDASRQWFKSCQGLEVTETSRDI 74
           +TLKA    D N  +    IT L   I   P+ +VT  D ++    +  G+  T      
Sbjct: 13  TTLKAPAEADQNLRD----ITELACYICDAPVAMVTRTDDTKLNLIAKVGISRTSVLIKE 68

Query: 75  SFCGHAINH-DGIFIVNDAQMDPRFHDNPLVTQSPHIRFYAGYPLTIRGEYRVGTLCLIG 133
           SFC +A+   D + +V DA +D RF  N +V   P  RFYAG PL       +GT+C+  
Sbjct: 69  SFCVYAMETPDAVMVVPDATLDHRFSTNAMVISGPGYRFYAGSPLIDPEGAVIGTICVYD 128

Query: 134 NEPREFSADDIETLTDLGQMVEA--ELLSI-----SLNTLDPLTMISNRRGFEQLAFQSL 186
           + P++ +   I +L  L + V A  EL  +     + +  D LT ++NRR F+       
Sbjct: 129 HVPKQLNQRQISSLQALSRQVIAILELKKVGEQLHNTSMTDALTGVNNRRAFDLKFEAEF 188

Query: 187 ASCRRTNSQAALVFFDLDFFKELNDSFGHRKGDQVLYDFAHLLMAAFRESDVIARLGGDE 246
           A  +RT     L   D+D FK  NDS+GH  GD+ L   A L     R  D  AR GG+E
Sbjct: 189 ARWQRTGQSFVLALIDIDHFKSFNDSYGHAAGDEALSQVAALFQRHSRNYDFFARYGGEE 248

Query: 247 FVVLLSFVKIDAVHVAIERFQSLLEQYNQQHPQQPTLVSSIGVAHWSPELDINLEDLLDA 306
           FV++L      + +  +E+ + ++  +     Q   L  SIG+A  S +L  + + LL+ 
Sbjct: 249 FVLILPGTDTASANKTLEKLRLVVANHEWLLRQ---LTVSIGLA--SADLFDDKKQLLEV 303

Query: 307 ADRAMYQDKAE 317
           AD+ +Y+ K +
Sbjct: 304 ADQMLYKAKTQ 314