Pairwise Alignments

Query, 361 a.a., hypothetical ATPase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 388 a.a., AFG1 family ATPase (RefSeq) from Shewanella sp. ANA-3

 Score =  260 bits (665), Expect = 4e-74
 Identities = 150/347 (43%), Positives = 199/347 (57%), Gaps = 41/347 (11%)

Query: 12  SGSTSPKGLYLWGDVGRGKTFLMDLFYDALPQRGKLRLHFHRFMARVHQALKVHAGQRDP 71
           S   +PKGLYLWG VGRGKT+LMD F+DALP   KLR HFHRFM ++H  L    G RDP
Sbjct: 78  SAPVAPKGLYLWGGVGRGKTYLMDTFFDALPGNQKLRAHFHRFMHQLHLDLDALKGTRDP 137

Query: 72  LKLIAKNLAKECKVLCFDEFFVSDIGDAMILAGLFETLFAQGVVLVATSNIPIERLYENG 131
           L +IAK +A + +V+CFDEFFVSDI DAM+L  LF+ LF +GVVLVATSNI  + LY+NG
Sbjct: 138 LLVIAKQMAAKYRVICFDEFFVSDITDAMLLGTLFQALFKEGVVLVATSNIIPDDLYKNG 197

Query: 132 LARHRFLPCIALLQAHTQMLHLNGKQDHRLHALSAKPSAEALAATSHNIGLTGTLDFDGI 191
           L R RFLP IAL+  H ++L+++   D+RL  L      E      H +      +    
Sbjct: 198 LQRARFLPAIALINQHCEVLNVDSGIDYRLRTL------EQAEIYHHPLDEEADTNLLRY 251

Query: 192 FAALTQNSPSIKDGKLRVCQREISVIRATTENQLPSVAWFDFNALCDGPRSQLDYIEIAS 251
           F  L   +  I    + +  R IS+       Q   V   DF ALCDGPRSQ DY+E+A 
Sbjct: 252 FRQLAPEA-EISTDAIEIEGRAISI-----RQQAQGVLLADFRALCDGPRSQRDYMELAR 305

Query: 252 RFKVLMLSNVPRLGGEVKGWIRARGTEDGTGDNQAATTGERQLSYAVNDDPARRFISLID 311
            +  +++S + ++G                             ++   DD ARRF++++D
Sbjct: 306 IYHTVLVSGIEQMG-----------------------------AFLTGDDIARRFLAMVD 336

Query: 312 ELYDQDVSLYLSCDVPLTELYQGGALSFEFRRTYSRLIEMSHSAAMK 358
           E Y+++V L +S  VPL E+Y  G LSFEFRR  SRLIEM     +K
Sbjct: 337 EFYERNVKLIVSAQVPLEEIYADGLLSFEFRRCRSRLIEMQSHDYLK 383