Pairwise Alignments

Query, 304 a.a., LysM domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 321 a.a., ErfK/YbiS/YcfS/YnhG from Pseudomonas syringae pv. syringae B728a

 Score =  204 bits (520), Expect = 2e-57
 Identities = 107/249 (42%), Positives = 152/249 (61%), Gaps = 4/249 (1%)

Query: 6   TTALLLTLVFPSLSALATEYPLPSPKSRLVGENLYYTVPEGKHTLEDIAAQFQLGLSNLL 65
           T  L L  +  + S  A E+PLP P   +VG+ +     + + T  D+  ++ LG   ++
Sbjct: 9   TRCLSLAALCAASSVHALEFPLPPPGEDIVGQ-VQVIKAKYEDTFADLGTRYDLGYLEMI 67

Query: 66  EANPGVDPFLPKPGSKLLIPKQLILPNAPREGIVINVAEMRLYYYPKGKKTVEVLPIGIG 125
            ANPGVDP+LP  G  +++P + ILP  PREGIVIN+AE R+YYYPKG+  V   P+G+G
Sbjct: 68  AANPGVDPWLPGAGKDIVLPTRFILPPGPREGIVINLAEYRMYYYPKGQNVVHTYPLGVG 127

Query: 126 QIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAARGEILPAVWPAGPDNPMGLYALYIG 185
           + G  +P   VT V  K  NPTWTP   I+ E+AA G+ LP V PAGPDNP+G +   +G
Sbjct: 128 REGWGSPIG-VTKVTAKTPNPTWTPPASIKAEHAADGDPLPDVVPAGPDNPLGPFKFGLG 186

Query: 186 -NLYAIHGTNASFGIGLRVSQGCVRLRHDDIEHLFKTVPIGTRVQFVNQPIKATEEPDGK 244
            + Y IHG+N  FGIG+R S GC R+ ++++  L    P+GT V+ +++P K      GK
Sbjct: 187 LSGYLIHGSNKKFGIGMRTSHGCFRMYNNNVLELADMAPVGTTVRIISEPYKFGIS-GGK 245

Query: 245 RYLAVHQPL 253
            YL  H P+
Sbjct: 246 VYLEAHTPV 254