Pairwise Alignments

Query, 304 a.a., LysM domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 304 a.a., ErfK/YbiS/YcfS/YnhG (RefSeq) from Shewanella amazonensis SB2B

 Score =  477 bits (1227), Expect = e-139
 Identities = 232/303 (76%), Positives = 262/303 (86%)

Query: 1   MSMLRTTALLLTLVFPSLSALATEYPLPSPKSRLVGENLYYTVPEGKHTLEDIAAQFQLG 60
           M  + +  +  +L+    SALA  YPLP+  SRLVGEN YY VP+ K TLEDIAAQFQLG
Sbjct: 1   MKPVFSLVIFFSLISFCQSALAVIYPLPAKDSRLVGENQYYVVPDDKRTLEDIAAQFQLG 60

Query: 61  LSNLLEANPGVDPFLPKPGSKLLIPKQLILPNAPREGIVINVAEMRLYYYPKGKKTVEVL 120
           LSNL+EANPGVDPFLPKPGS L+IP QLILP+APREGIVIN+AEMRLYYYPKGKK VEVL
Sbjct: 61  LSNLMEANPGVDPFLPKPGSTLIIPHQLILPDAPREGIVINIAEMRLYYYPKGKKIVEVL 120

Query: 121 PIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAARGEILPAVWPAGPDNPMGLY 180
           PIGIGQ+G+DTPENWVT+VQRKRANPTWTPT RIRKEYAA+G  LP VWPAGPDNPMGL+
Sbjct: 121 PIGIGQVGRDTPENWVTTVQRKRANPTWTPTARIRKEYAAKGVTLPPVWPAGPDNPMGLF 180

Query: 181 ALYIGNLYAIHGTNASFGIGLRVSQGCVRLRHDDIEHLFKTVPIGTRVQFVNQPIKATEE 240
           ALYIGNLYAIHGTNA+FGIGLRVSQGCVRLR  DIEHLF +VP+GTRVQFVNQPIKATEE
Sbjct: 181 ALYIGNLYAIHGTNATFGIGLRVSQGCVRLRDTDIEHLFNSVPVGTRVQFVNQPIKATEE 240

Query: 241 PDGKRYLAVHQPLSRTIAEFESNEPVALSLPKDIAKFIAKADTDSSMIKKLLDERTGVPA 300
           PDG RYL VHQPLSRT AEF+S EPV L+LP  I++F+A A+TDS ++K+LL+ RTG+P 
Sbjct: 241 PDGARYLEVHQPLSRTQAEFDSAEPVPLTLPTAISRFVAHAETDSFVLKRLLEARTGMPT 300

Query: 301 IIN 303
            IN
Sbjct: 301 RIN 303