Pairwise Alignments

Query, 304 a.a., LysM domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 304 a.a., transpeptidase from Klebsiella michiganensis M5al

 Score =  374 bits (961), Expect = e-108
 Identities = 180/286 (62%), Positives = 223/286 (77%), Gaps = 1/286 (0%)

Query: 19  SALATEYPLPSPKSRLVGENLYYTVPEG-KHTLEDIAAQFQLGLSNLLEANPGVDPFLPK 77
           +A A  YPLP+  SRL+G+N   T+PEG K  LE  AA++Q+GLSN+LEANPGVD FLPK
Sbjct: 19  TASAVTYPLPTDGSRLIGQNQVITIPEGNKQPLEYFAAEYQMGLSNMLEANPGVDTFLPK 78

Query: 78  PGSKLLIPKQLILPNAPREGIVINVAEMRLYYYPKGKKTVEVLPIGIGQIGKDTPENWVT 137
            G+ L IP+QLILP+   EGIVIN AEMRLYYYPKG  TV VLPIGIGQ+GKDTP NWVT
Sbjct: 79  GGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWVT 138

Query: 138 SVQRKRANPTWTPTPRIRKEYAARGEILPAVWPAGPDNPMGLYALYIGNLYAIHGTNASF 197
            V+RK+A PTWTPT ++  EYAA GE LPAV PAGPDNPMGLYALYIG LYAIHGTNA+F
Sbjct: 139 KVERKKAGPTWTPTAKMHAEYAAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANF 198

Query: 198 GIGLRVSQGCVRLRHDDIEHLFKTVPIGTRVQFVNQPIKATEEPDGKRYLAVHQPLSRTI 257
           GIGLRVS GCVRLR+DDI+ LF+ VP+GTRV+F+++P+KAT EPDG R++ VH PLS T 
Sbjct: 199 GIGLRVSHGCVRLRNDDIKFLFENVPVGTRVEFIDEPVKATTEPDGSRFIEVHNPLSTTE 258

Query: 258 AEFESNEPVALSLPKDIAKFIAKADTDSSMIKKLLDERTGVPAIIN 303
            +F+  E V ++L K +    ++ D D S++ + +  R+G+P  +N
Sbjct: 259 EQFQGGEIVPINLTKSVQAITSQTDVDQSVVDQAIQNRSGMPVRLN 304