Pairwise Alignments

Query, 574 a.a., sodium/hydrogen exchanger family/TrkA domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 599 a.a., sodium:proton antiporter from Vibrio cholerae E7946 ATCC 55056

 Score =  117 bits (294), Expect = 1e-30
 Identities = 101/378 (26%), Positives = 174/378 (46%), Gaps = 19/378 (5%)

Query: 29  RLGIPILLIFLAVGILAGED----GPGGILFDDYSTAYLVSNFALAIILLDGGMRTRVAS 84
           RL +P +L  L  GILAG       P  ++ D     + + + A+A+IL +G +      
Sbjct: 27  RLRLPAILFLLLAGILAGPVFGVLNPEALMGD---LLFPLVSLAVAVILFEGSLTLNFKE 83

Query: 85  FRVALWPALSLATFGVAITTSITGVMAAWLFDLHWLQGLLVGAIVGSTDAAAVFSLLKGR 144
            R       S+ T G  ++  IT   A WL    W   L+ G++   T    +  LL+  
Sbjct: 84  IRGVSNTVWSIVTVGALVSWGITSTAAHWLLGFEWPLALMFGSLTVVTGPTVIVPLLRTV 143

Query: 145 SLNERVGATLEIESGSNDPM-AVFLTVTLIAILANVGAELSASFMLISFIKQFGLGVLLG 203
               R+   L  E    DP+ A+F+ +    I+++  A     F LI  +     G  +G
Sbjct: 144 RPTARLANILRWEGILIDPLGALFVVMVYEFIVSSSHAHSLEVFSLILLV-----GFSIG 198

Query: 204 LGGGWLLWKLVNVSKLAEGLYSILVLSGGLMIYATSNKL-GGSGILSIYLVGLFLGNKPT 262
           +  G  +  ++    L E L    VLS  L ++A SN L   SG+L++ ++G++L N   
Sbjct: 199 IASGVAVAAVLRRGLLPEYLQPFAVLSVVLGVFAASNALESESGLLTVTVMGMWLANAKG 258

Query: 263 RGRHAILNVLDGMTWVSQIGMFLVLGLLLTPSDLLDIWLPGLALAFGMILFARPLAVWLS 322
                IL+  + +T +   G+F++L   +  +D   +    L L   M L ARP ++++S
Sbjct: 259 VNIQHILHFKEHLTILLITGLFILLAARIEVADFQALGWSALGLFVVMQLLARPASIFIS 318

Query: 323 LLPFKSFGSRDRWFISWVGLRG----AVPIILAVFPMMAGLPGAQLYFNLAFFVVIVSLL 378
            L   +   R++ F++WV  RG    ++  + A+  M  G+  A+L   L F V+I +++
Sbjct: 319 TLR-STLNVREKAFLAWVAPRGIVAASISSLFAIKLMEFGIADAKLLVPLTFMVIIGTVV 377

Query: 379 VQGASLTTAARLAKVELP 396
           +Q A+    A   KV  P
Sbjct: 378 LQSATARPMALALKVSEP 395