Pairwise Alignments

Query, 336 a.a., sugar-binding protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 318 a.a., Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) from Pseudomonas fluorescens FW300-N2E2

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 67/314 (21%), Positives = 130/314 (41%), Gaps = 20/314 (6%)

Query: 6   MLIIALGLLPISSVYGKEL---KLALVPK-----FYSVFFDQSKNGCIDAAAQIEGVECI 57
           ML  A   LP+SS + +     K+ALV K     F+    D +K    + +A  + +   
Sbjct: 14  MLAAASAALPLSSAFAQTAEKPKVALVMKSLANEFFLTMEDGAKAYQKEHSADFDLISNG 73

Query: 58  YRGPEISSVRLQDQVINQLIDEGVDGIAVAVTQSKYLVENSLKRAKEVGIPIVTYDSDFD 117
            +  + +    Q +++ Q+I   VD + +A   SK +V   +K+A + GI ++  D+  D
Sbjct: 74  IK--DETDTANQIRIVEQMIVSKVDALIIAPADSKAMVP-VIKKAVDAGITVINIDNQLD 130

Query: 118 ASINGDPKNFRLAYIGTDNFELGKSLGEELKKLRPNGGMLIMQSGRPDSPNLNLRLMGVR 177
            ++    KN  + ++G DN +  + +GE L K    G  + +  G   + N   R  G +
Sbjct: 131 PAVVKS-KNINVPFVGPDNRKGARLVGEYLAKQLKAGDEVGIIEGVSTTTNAQARTAGFK 189

Query: 178 SALSGKKYDIPPGKLLNNEQGWTEVREPLFNFDQLSQAVKQMESVMKGK---PVKADSFI 234
            A+   +      K+++ + G  E+ +       +      +++++ G     V A S +
Sbjct: 190 DAMEAAQV-----KVVSLQSGDWEINKGNQVAASMLSEYPNIKALLAGNDSMAVGAVSAV 244

Query: 235 AVGGWAQNNDALYRDMIAPFQEKINDKEVVIVMTDTSPEQLTMLKDNLAHINVGQNPYEM 294
              G A     +  D I   +  + D  V+      + +Q     +    I  G+     
Sbjct: 245 RAAGKAGKVQVVGYDNINAIKPMLKDGRVLATADQFAAKQAVFGIETALKILKGEKVDSG 304

Query: 295 GRQAILTLYKIVTK 308
               I T  ++VTK
Sbjct: 305 TNGVIETPVELVTK 318