Pairwise Alignments

Query, 336 a.a., sugar-binding protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 318 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Pseudomonas fluorescens FW300-N1B4

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 69/312 (22%), Positives = 129/312 (41%), Gaps = 16/312 (5%)

Query: 6   MLIIALGLLPISSVYGK---ELKLALVPK-FYSVFFDQSKNGCIDAAAQIEG-VECIYRG 60
           ML  A   LP+SS + +   + K+ALV K   + FF   ++G         G  E I  G
Sbjct: 14  MLAAASAALPVSSAFAETPEKPKVALVMKSLANEFFLTMEDGAKAYQKDHSGDFELISNG 73

Query: 61  -PEISSVRLQDQVINQLIDEGVDGIAVAVTQSKYLVENSLKRAKEVGIPIVTYDSDFDAS 119
             + +    Q +++ Q+I   V+ + +A   SK +V   +K+A + GI ++  D+  D +
Sbjct: 74  IKDETDTAGQTRIVEQMILSKVNALVIAPADSKAMVP-VIKKAVDAGITVINIDNQLDPA 132

Query: 120 INGDPKNFRLAYIGTDNFELGKSLGEELKKLRPNGGMLIMQSGRPDSPNLNLRLMGVRSA 179
           +    KN  + ++G DN +  + +GE L K    G  + +  G   + N   R  G + A
Sbjct: 133 VVKS-KNITVPFVGPDNRKGARLVGEYLAKQLKAGDEVGIIEGVSTTTNAQQRTAGFKDA 191

Query: 180 LSGKKYDIPPGKLLNNEQGWTEVREPLFNFDQLSQAVKQMESVMKGK---PVKADSFIAV 236
           +   +      K+++ + G  E+ +       +      +++++ G     V A S +  
Sbjct: 192 MEAAQI-----KVVSLQSGDWEIDKGGKVASSMLSEYPNIKALLAGNDSMAVGAVSAVRA 246

Query: 237 GGWAQNNDALYRDMIAPFQEKINDKEVVIVMTDTSPEQLTMLKDNLAHINVGQNPYEMGR 296
            G A     +  D I   +  + D  V+      +  Q     +    I  G+       
Sbjct: 247 AGKAGKVQVVGYDNINAIKPMLKDGRVLATADQFAARQAVFGIETALKIIKGETVDSGAN 306

Query: 297 QAILTLYKIVTK 308
             I T  ++VTK
Sbjct: 307 GVIETPVELVTK 318