Pairwise Alignments

Query, 336 a.a., sugar-binding protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 337 a.a., periplasmic binding ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  186 bits (471), Expect = 9e-52
 Identities = 112/336 (33%), Positives = 179/336 (53%), Gaps = 11/336 (3%)

Query: 2   ARLLMLIIALGLL-PISSVYGKELKLALVPKFYSVFFDQSKNGCIDAAAQIEGVECIYRG 60
           A L +  +A GL  P ++   +E  L       + F    + GC  AA ++  V C Y G
Sbjct: 9   AALSVACLAAGLTAPQANAADREFALVF-KVLNNAFSPPIQQGCEAAAKKLGDVTCTYLG 67

Query: 61  PEISSVRLQDQVINQLIDEGVDGIAVAVTQSKYLVENSLKRAKEVGIPIVTYDSDFDASI 120
           P       Q Q+   ++  GV G+ V+    K +    +K A++ GIP+VT+D+D    +
Sbjct: 68  PTEYDEAKQVQLAQDMVTRGVAGLGVSAGNPKAMAR-IMKMAQDKGIPVVTFDTD----V 122

Query: 121 NGDPKNFRLAYIGTDNFELGKSLGEELKKLRPNGGMLIMQSGRPDSPNLNLRLMGVRSAL 180
             +    R  YIGTDN+E G +L +++ + + +GG + +QSG P S NL  R+ G+R  L
Sbjct: 123 LPEDAGLRSTYIGTDNYEFGIALAQKVLESKKDGGTVCIQSGAPASENLKARVQGIRDTL 182

Query: 181 SGKKYDIPPGKLLNNEQGWTEVRE-PLFNFDQLSQAVKQMESVMKGKPVKADSFIAVGGW 239
           +G   D    KL   + GWTE    P++N D ++ A +Q+  VM   P +  +F+AVGGW
Sbjct: 183 AGVTKDKGAEKL-TGQNGWTEPAGCPVYNNDDITLAAQQVRDVMTNNP-ELSAFVAVGGW 240

Query: 240 AQNNDALYRDMIAPFQEKINDKEVVIVMTDTSPEQLTMLKDNLAHINVGQNPYEMGRQAI 299
           AQ     Y+  + P + +++ K++V+V  D    QL +L + L+H N+GQ PY+MG + I
Sbjct: 241 AQYAPQAYKQAMEPLKARLDSKDLVVVFGDNFGPQLPLLAEGLSHYNIGQRPYDMGYETI 300

Query: 300 LTLYKIVTKQQYEEVIYTPVTFCTPQN-FNTCEKRA 334
           + L K+   ++ E  I T    CTP++   TC K A
Sbjct: 301 MALDKLTKGEKVEPFIKTGTEVCTPEDALTTCGKTA 336