Pairwise Alignments

Query, 336 a.a., sugar-binding protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 343 a.a., sugar ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

 Score = 51.2 bits (121), Expect = 4e-11
 Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 19/224 (8%)

Query: 5   LMLIIALGLLPISSVYGKELKLALVPKFYSV-FFDQSKNGCIDAAAQIEGVECIYRGPEI 63
           L   +  G +  S     E ++A +PK   V FF     G + A  ++ G +  Y GP  
Sbjct: 11  LAAALLAGTVLASGAAHAENQIAFIPKLVGVGFFTSGGAGAVKAGEEV-GAKVTYDGPTE 69

Query: 64  SSVRLQDQVINQLIDEGVDGIAVAVTQSKYLVENSLKRAKEVGIPIVTYDSDFDASINGD 123
            SV  Q Q IN  +++G + + V+      L   +LKRA E G+ ++T+DSD    +N D
Sbjct: 70  PSVSGQVQFINNFVNQGYNALIVSSVSPDGLCP-ALKRAMERGVLVMTWDSD----VNPD 124

Query: 124 PKNFRLAYIGTDNFELGKSL----GEELKKLRPNGGMLIMQSGRPDSPNLNLRLMGVRSA 179
            +++ +   GT   +LG  L     E +KK +              SP +  +     +A
Sbjct: 125 CRSYYINQ-GTPE-QLGGLLVDMAAEGVKKEKAKVAFFY------SSPTVTDQNAWAEAA 176

Query: 180 LSGKKYDIPPGKLLNNEQGWTEVREPLFNFDQLSQAVKQMESVM 223
            +    + P  +++  + G+ + ++ L   + + Q    +++++
Sbjct: 177 KAKIAKEHPGWEIVTTQYGYNDAQKSLQTAESILQTYPDLDAII 220