Pairwise Alignments

Query, 336 a.a., sugar-binding protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 394 a.a., sugar uptake ABC transporter substrate-binding protein precursor from Sinorhizobium meliloti 1021

 Score =  144 bits (362), Expect = 5e-39
 Identities = 100/332 (30%), Positives = 164/332 (49%), Gaps = 15/332 (4%)

Query: 4   LLMLIIALGLLPISSVYGKELKLALVPKFYSVFFDQSKNGCI--DAAAQIEGVECIYRGP 61
           LL+ + AL L   +++  K+  + +V    + FF+    GC   +        EC Y GP
Sbjct: 70  LLLAVAALALSAGTAMAQKKQLVIVVKGLDNPFFEAINQGCQKWNKENPDSEYECFYTGP 129

Query: 62  EISSVRLQDQVINQLIDEGVDGIAVAVTQSKY-LVENSLKRAKEVGIPIVTYDSDFDASI 120
             +S    +  I Q +    +  A+A++ S   L+  +LK A    +P++T D+D  A  
Sbjct: 130 ASTSDEAGEAQIVQDMLGKAETAAIAISPSNAKLIAQTLKTANP-SVPVMTVDADLAA-- 186

Query: 121 NGDPKNFRLAYIGTDNFELGKSLGEELKKLRPNGGMLIMQSGRPDSPNLNLRLMGVRSAL 180
             +    R  Y+GTDN+ +G  +GE +KK +PNGG +    G P + N+  R  G+R AL
Sbjct: 187 --EDSALRKTYLGTDNYLMGYRIGEYIKKAKPNGGKICTIEGNPGADNILRRAQGMRDAL 244

Query: 181 SGKKYDIPPGKLLNNEQGWTEVRE-PLFNFDQLSQAVKQMESVMKGKPVKADSFIAVGGW 239
           +G+K        L  E  WTEV   P+F  D  ++ V+ M  ++   P   D+F  +GGW
Sbjct: 245 TGQKGLAE----LKGEGNWTEVAGCPVFTNDDGAKGVQAMTDILAANP-DLDAFGIMGGW 299

Query: 240 AQ-NNDALYRDMIAPFQEKINDKEVVIVMTDTSPEQLTMLKDNLAHINVGQNPYEMGRQA 298
                   YRD+  P  +KI   E VI   DT  E++ + ++ L    VGQ P+EMG +A
Sbjct: 300 PLFGAPQPYRDLFKPMADKIAKNEFVIGAADTIGEEVAIAREGLVTALVGQRPFEMGYKA 359

Query: 299 ILTLYKIVTKQQYEEVIYTPVTFCTPQNFNTC 330
              +  ++  +  E+ ++T +  CT +  +TC
Sbjct: 360 PQVMLDLIAGKPVEDPVFTGLDECTKETADTC 391