Pairwise Alignments

Query, 336 a.a., sugar-binding protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 345 a.a., sugar uptake ABC transporter substrate-binding protein precursor from Sinorhizobium meliloti 1021

 Score = 54.3 bits (129), Expect = 4e-12
 Identities = 62/260 (23%), Positives = 108/260 (41%), Gaps = 27/260 (10%)

Query: 39  QSKNGCIDAAAQIEGVECIYRGPEISSVRLQDQVINQLIDEGVDGIAVAVTQSKYLVENS 98
           ++    I AA +  G + I    + S+ + Q   I  LI +G + + V + Q    +  +
Sbjct: 41  KTDEAAIKAALEASGDKYISADAQSSAAK-QLTDIESLIAQGANALIV-LAQDSDAIGPA 98

Query: 99  LKRAKEVGIPIVTYDSDFDASINGDPKNFRLAYIGTDNFELGKSLGEELKKLRPNGGMLI 158
           +++A   GIP+V YD   +     +P  F   YI  DN E+G+    E+ K +P G  + 
Sbjct: 99  IEKAAAEGIPVVGYDRLIE-----NPDAF---YITFDNKEVGRLQAREVFKQKPEGNFVF 150

Query: 159 MQSGRPDSPNLNLRLMGVRSALSGKKYDIPPGKLLNNEQGWTEVREPLFNFDQLSQAVKQ 218
           ++    D PN +    G    L   K  I  GK+ N  + +T+  +P         A K 
Sbjct: 151 IKGSSAD-PNADFLFSGQLEVL---KEAIDAGKIKNVGEAYTDGWKP-------ENAQKN 199

Query: 219 MESVMKGKPVKADSFIAVGGWAQNNDALYRDMIAPFQEKINDKEVVIVMTDTSPEQLTML 278
           ME  +     K D+ +A      +ND      IA    +     V +   D     L  +
Sbjct: 200 MEQFLTANDNKVDAVVA------SNDGTAGGAIAALDAQGLAGSVPVSGQDADKAALNRV 253

Query: 279 KDNLAHINVGQNPYEMGRQA 298
                 ++V ++  E+G++A
Sbjct: 254 ALGTQTVSVWKDSRELGKKA 273