Pairwise Alignments

Query, 336 a.a., sugar-binding protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 312 a.a., ribose ABC transporter, periplasmic binding protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 57.4 bits (137), Expect = 5e-13
 Identities = 72/308 (23%), Positives = 120/308 (38%), Gaps = 34/308 (11%)

Query: 24  LKLALVPKFYSVFFDQSKNGCIDAAAQI-----EGVECIYRGPEISSVRLQDQVINQLID 78
           L+  LVPK    +FD+  +G   AA  +       V   YR P+ + V  Q+ +I + I 
Sbjct: 31  LRFVLVPKVVHPWFDKVNDGAKAAAEMLTTTTGRKVTVEYRAPQKADVVEQNDIIARSIA 90

Query: 79  EGVDGIAVAVTQSKYLVENSLKRAKEVGIPIVTYDSDFDASINGDPKNFRLAYIGTDNFE 138
              DGI V +   K      L+ A+E GIP+  +DS         P+   L  IG D  E
Sbjct: 91  TRPDGIFVDLLDEKGN-RAVLEEAQEQGIPVTVFDSVA-------PEGMNLTSIGNDFCE 142

Query: 139 LGKSLGEELKKLRPNGGMLIMQSGRPDSPNLNLRLMGVRSALSGKKYDIPPGKLLNNEQG 198
                   L +L    G + +  G P +PN  +R        +  KY  P  KL+     
Sbjct: 143 QATIASTRLVELMGGKGEVAIMMGVPTAPNHAIRAKCHEQTFA--KY--PDIKLVATG-- 196

Query: 199 WTEVREPLFNFDQLSQAVKQMESVMKGKPVKADSFIAVGGWAQNNDALYRDMIAPFQEKI 258
                    + D +  A KQ  ++M+  P        + GW  ++ A    +    +E  
Sbjct: 197 --------IDNDSIETAQKQAAAIMQAHP-------NLKGWVASDAAGPIGIGQAIKEAG 241

Query: 259 NDKEVVIVMTDTSPEQLTMLKDNLAHINVGQNPYEMGRQAILTLYKIVTKQQYEEVIYTP 318
              +V  V  D  P+ L ++K+ +   +    P   G  A++  ++        + I T 
Sbjct: 242 KVGKVFEVGLDDLPDLLALIKEGVVDSSSSTKPEMQGYWAVIATWQKAMGMPTPKYIDTG 301

Query: 319 VTFCTPQN 326
           +   T ++
Sbjct: 302 IAVITKES 309