Pairwise Alignments

Query, 419 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 369 a.a., RND transporter from Azospirillum brasilense Sp245

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 93/395 (23%), Positives = 151/395 (38%), Gaps = 91/395 (23%)

Query: 20  LKLPLIIGGCTLLVSALVWASFSS-DKVS----------QSISRSELTTATLHVGTLTRD 68
           L LPL+I G  L    + W + SS D VS          +++  S +    +    LT  
Sbjct: 1   LLLPLLIVGA-LAAGGVAWKATSSHDAVSPAVAGLPPAERAVELSPVELTRMAPRRLTEL 59

Query: 69  VATTGKIVAANAPILYSTEEGTVTLLSNP---GDNVARGDVVAKLDSPRLTNALEQAQSV 125
           V  +G +      ++ S  E    L+  P   G  V +G+V+A+ D+  L          
Sbjct: 60  VRLSGSVKPMEQSMVKS--EVAARLVEVPVREGQAVRKGEVLARFDTVEL---------- 107

Query: 126 LAGMQSALERAKLDARRSQLQANQTLDMAKVDLEAAERERRRGELLIQSKLIGQIDYEKG 185
                    +AKLD + S L+       AK  L  A++ R +   L Q  ++ + + ++ 
Sbjct: 108 ---------QAKLDEKLSNLEG------AKAQLVLADKTRAKNLALRQKDIVSETNMDQA 152

Query: 186 KDDLHKAKLKFEHALQEVALTKDTLTFEVKNKALEVERQQLAVRELERQVEALNIKAPVN 245
           +     +  +F+ A                  ALE +   LA + L   V    + +P++
Sbjct: 153 Q-----SSFRFQQATVA---------------ALEAQ-VDLARKALRDAV----VMSPID 187

Query: 246 GIIGNWLTEQKNHLSANQPILTVVDLSAYEAELAVPESYADELGLGMEVEL---SFGEVK 302
           G +          L+ N  + +VVDLS  E E AVP      L  G  V L    FGE  
Sbjct: 188 GTVAERAVNPGETLAVNAKMFSVVDLSRVEVEAAVPADDVARLKPGQTVRLRVEGFGERD 247

Query: 303 LIGKLSSISPEVRNREVTARVQFTQNDSLKLRQNQRISARVLLEHRDNVLMVKRGAFMTS 362
            +G+++ I+P  R                     + I   ++L++ D  L   RG    +
Sbjct: 248 FVGQIARINPMAR------------------AGTRAIPVYIVLDNADGAL---RGGMFAA 286

Query: 363 GGDEVYQVEGDIATRRQIKLGSTSMSQVEVVEGGK 397
           G   V +VEG  A            + V VV GG+
Sbjct: 287 GDAVVDEVEGAFALPPAAVRHDQDGTFVLVVSGGR 321