Pairwise Alignments

Query, 419 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 377 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Xanthomonas campestris pv. campestris strain 8004

 Score = 74.3 bits (181), Expect = 6e-18
 Identities = 79/303 (26%), Positives = 122/303 (40%), Gaps = 44/303 (14%)

Query: 102 ARGDVVAKLDSPRLTNALEQAQSVLAGMQSALERAKLDARRSQLQANQTLDMAKVDLEAA 161
           A   VVAK     L   +E+ Q V AG   AL R  LD  R+ L   Q+    +  L   
Sbjct: 74  AEAQVVAKTSGVALAVMVEEGQKVSAGQ--ALVR--LDPDRAHLAVAQS----EAQLRKL 125

Query: 162 ERERRRGELLIQSKLIGQIDYEKGKDDLHKAKLKFEHALQEVALTKDTLTFEVKNKALEV 221
           E   RR   L+  +L+   D ++ K D+  ++ +   A  E++ T               
Sbjct: 126 ENSYRRATQLVGQQLVSAADVDQLKFDVENSRAQHRLASLELSYT--------------- 170

Query: 222 ERQQLAVRELERQVEALNIKAPVNGIIGNWLTEQKNHLSANQPILTVVDLSAYEAELAVP 281
                             ++AP++G+I +   +  N +  N PI  +VD S  EA L VP
Sbjct: 171 -----------------TVQAPISGVIASRSIKTGNFVQINTPIFRIVDDSQLEATLNVP 213

Query: 282 ESYADELGLGMEVEL---SFGEVKLIGKLSSISPEVRNREVTARVQFTQNDSLKLRQNQR 338
           E     L  G  V L   +    + +GK+  I+P V +   T RV        +  Q   
Sbjct: 214 ERELATLKSGQPVTLLADALPGQQFVGKVDRIAPVVDSGSGTFRVVCAFGAGAEALQPGM 273

Query: 339 IS-ARVLLEHRDNVLMVKRGAFMTSGGDEVYQVEGDIATRRQIKLGSTSMSQVEVVEGGK 397
               R+  + R + L++ R A +  G   V+ V    A+R  +KLG      +EV +G K
Sbjct: 274 FGRIRIDYDQRKDALVIPRLALLDDGEPAVFVVRNGKASRVPVKLGYAEGPWLEVRQGLK 333

Query: 398 ASD 400
             D
Sbjct: 334 EGD 336