Pairwise Alignments

Query, 419 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 361 a.a., Membrane fusion protein of RND family multidrug efflux pump from Xanthomonas campestris pv. campestris strain 8004

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 57/260 (21%), Positives = 114/260 (43%), Gaps = 30/260 (11%)

Query: 174 SKLIGQIDYEKGKD-DLHKAKLKFEHALQEVALTKDTLTFE----VKNKALEVERQQLA- 227
           S ++ Q++++ G +    +  L+     Q+ ALT    TFE    +  + L +  QQL  
Sbjct: 70  SDVVEQVNFDSGDEVKAGQLLLRLRGNSQQAALTAAQATFEETEQLYRRQLSLVGQQLVA 129

Query: 228 -----------------VRELERQVEALNIKAPVNGIIGNWLTEQKNHLSANQPILTVVD 270
                            V+++  ++    ++AP +G++G       + ++A+  I T+ D
Sbjct: 130 KSTVDTQRALRDAAEARVQQMRAEITDREVRAPFSGVLGIRQVSPGSLITASTVITTLDD 189

Query: 271 LSAYEAELAVPESYADELGLGMEVE---LSFGEVKLIGKLSSISPEV--RNREVTARVQF 325
           +     +  VPES    + LG  V     ++   +  G++++I   +    R VT R  F
Sbjct: 190 VERMYVDFQVPESQLGLVELGNAVNGSAAAYPGAQFEGEVAAIDSRIDETTRSVTVRADF 249

Query: 326 TQNDSLKLRQNQRISARVLLEHRDNVLMVKRGAFMTSGGDEVYQVEGDIATRR-QIKLGS 384
             ND  +LR    +  R+    R  +++ +           V++V+ D +  R  ++LG 
Sbjct: 250 -PNDDRRLRPGMLLDVRLFQPARQALVIPEIAVVQVGRESYVFRVKPDSSVERADVRLGE 308

Query: 385 TSMSQVEVVEGGKASDVWVI 404
               +VE++EG KA +  V+
Sbjct: 309 RRDGKVEILEGVKAGERIVV 328