Pairwise Alignments

Query, 419 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 364 a.a., efflux transporter, RND family, MFP subunit from Marinobacter adhaerens HP15

 Score = 61.6 bits (148), Expect = 4e-14
 Identities = 82/393 (20%), Positives = 151/393 (38%), Gaps = 74/393 (18%)

Query: 35  ALVWASFSSDKVSQSISR---SELTTATLHVGTLTRDVATTGKIVAANAPILYSTEEGTV 91
           A V+ +F     +QS      S + T    +  +   V   G + A NA  L +   G V
Sbjct: 19  AFVYQNFDDGTAAQSGRERPASAVNTMLPQMEAVRDVVNAVGSLKALNAVELTTEVSGRV 78

Query: 92  TLLS-NPGDNVARGDVVAKLDSPRLTNALEQAQSVLAGMQSALERAKLDARRSQLQANQT 150
             L+   G  V +GDV+ +LD  +    L+  ++ LA  +  LERA+      +L++N +
Sbjct: 79  VELNLETGRRVGQGDVLLRLDDRQAWADLQVIEAQLADARRQLERAQ------RLRSNNS 132

Query: 151 LDMAKVDLEAAERERRRGELLIQSKLIGQIDYEKGKDDLHKAKLKFEHALQEVALTKDTL 210
           +  +                        Q+D  +   D+                     
Sbjct: 133 ISQS------------------------QVDQLRTSVDV--------------------- 147

Query: 211 TFEVKNKALEVERQQLAVRELERQVEALNIKAPVNGIIGNWLTEQKNHLSANQPILTVVD 270
                    E +RQ   VR     +E   I+AP  G++G        +++A   + T+  
Sbjct: 148 --------AEAQRQSAQVR-----LENHRIEAPFAGVVGLSDISVGAYITAGTSVTTLDT 194

Query: 271 LSAYEAELAVPESYADELGLGMEVE---LSFGEVKLIGKLSSISPEVR--NREVTARVQF 325
               E   ++PE +  ++ LG EV     ++ +    G+L  +   V   +R +  R   
Sbjct: 195 TDRMELGFSIPERFLGQVSLGQEVRGASPAYPDQTFSGQLVELGSRVSELSRSLPVRALI 254

Query: 326 TQNDSLKLRQNQRISARVLLEHRDNVLMVKRGAFMTSGGDEVYQVEGDIATRRQIKLGST 385
              D L LR  Q +SA + L  R  +++ ++   +      V+  E  +A R  + LGS 
Sbjct: 255 DNPDGL-LRPGQFMSATLTLRQRQALVIPEQAVMIRGDEQYVFVAEDGVARRVSVSLGSR 313

Query: 386 SMSQVEVVEGGKASDVWVISSVEPFNHAEQVKI 418
               VEV  G    D  +++  +  +  ++V++
Sbjct: 314 MPGFVEVSSGLSQEDPVIVTGQDRLSSGDRVRV 346