Pairwise Alignments

Query, 399 a.a., ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 410 a.a., FtsX-like permease family protein from Rhodanobacter denitrificans FW104-10B01

 Score =  214 bits (544), Expect = 5e-60
 Identities = 143/412 (34%), Positives = 222/412 (53%), Gaps = 16/412 (3%)

Query: 2   LHIKPILSSLLRSKSGPLLLLLQIMLSVAIVANASFIIVERLSLMARESGIVENEVFDFS 61
           + ++PILS+L R K+   LL+L+I L+ AIV NA F+I  RL  M   +GI E+ +    
Sbjct: 1   MELRPILSTLRRHKTTAALLILEIALTCAIVCNAVFMIGHRLQHMRMSTGIDEHALVQVQ 60

Query: 62  IYHFDKSTDLVAQDKRDLELLRAIPGVIDVAPSSMAPLSGGGWSSNFTLGPEERAKSTPN 121
           +     + D+ A+ + DL +L+ +PGV  VA ++  PL G   +++  L P +RA  T +
Sbjct: 61  LAEIAPTPDIYARAREDLAVLKQVPGVQAVALTNQLPLQGSSSNASIKLDPAQRAP-TLS 119

Query: 122 TGMYMSDEHFIDSLGLKLVEGRNFYPQEITT-----ELLEDGGKM------IVTKAFVDK 170
            G Y  ++    ++G +LV GRN  P E T      + L  G         ++T+    +
Sbjct: 120 VGTYFGED-IPQTMGTRLVAGRNLRPDETTNADLVVKALASGNTKGLPAVTVITQELAQR 178

Query: 171 VWPNDSALGKSVYMGSQHYV-VIGVVERLQTAWVDN-SNVEYSSVLSVNYPADYKR-YLV 227
           +WP  + LGKS+Y+  Q  V V+GV+  L  A   N +   YS VL +   A   + Y++
Sbjct: 179 LWPGQNPLGKSIYVTDQVSVRVVGVLADLVRANAYNDATAHYSVVLPLFMGAGKDQSYVI 238

Query: 228 RAKASDIARLKEVIPEVLHKEYPSRVIEGFTTISERRIEAYRDHELMATVLTMMVVLLLL 287
           R +  D A + +V    L K  P RV+    +  E R + + +   MA VL  +++ LL 
Sbjct: 239 RTRPQDRATVLKVAVAALKKADPERVVTTQRSYDELRQKFFANDRAMAGVLVGVILALLT 298

Query: 288 ITSLGVTGMVMFNIQRRTKQIGTRRALGAKKRDIISYFLVENYLLCLLGGTLGVLLAIQL 347
           +T+LG+ G+  F + +R + IG RRALGA + DI+ YF  EN+LL  +G  LG+LLA  +
Sbjct: 299 VTALGIVGLASFWVAQRRRTIGVRRALGATRADILRYFQTENFLLASIGIALGMLLAYGI 358

Query: 348 GQQLMSLYSLPMLALSYPLFTVVGLFVVTTLAVYLPARKAAKISPATATRTV 399
              LM  Y LP L   Y     V L+++  +AV  PA +AA + P  ATR+V
Sbjct: 359 NLFLMLHYELPRLPAIYFPIGAVTLWLIGQVAVLGPALRAAAVPPVVATRSV 410