Pairwise Alignments

Query, 475 a.a., sigma-54 dependent nitrogen response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 504 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  628 bits (1620), Expect = 0.0
 Identities = 324/478 (67%), Positives = 386/478 (80%), Gaps = 15/478 (3%)

Query: 1   MDTILIVDDNHAICQALGLMLEINGYQVLTCHTPDDALNLIAAHDIDLVIQDMNFTRDTT 60
           MD ILIVDDN  +CQAL LMLE+NGY+     +P+ AL+ I  H+  LVIQDMNFTRDTT
Sbjct: 30  MDKILIVDDNLDVCQALSLMLELNGYKSHCVQSPEMALDAIEKHEFSLVIQDMNFTRDTT 89

Query: 61  SGEEGRQLFYALRERQPDLPIILMTAWTQLETAVELVKVGAADYMGKPWDDAKLLNSITN 120
           SGEEGR+LF+ALRE +P +PIIL+TAWT+LE AVEL+K GAADY+GKPWDDAKLL SI N
Sbjct: 90  SGEEGRELFHALRECRPGIPIILLTAWTELEMAVELMKAGAADYLGKPWDDAKLLTSIGN 149

Query: 121 LVALYKLACTNHQLERVNSQRQVAIADAELCGIVFGSGAMQRCIDLALQLARSDVSVLIT 180
           L++L+KL+  N +L+R  ++R   I +A LCG+VFGS AM+RC+DLALQLA+SDVSVLIT
Sbjct: 150 LISLHKLSRENGELKRQKAERTAVIHEANLCGLVFGSTAMERCVDLALQLAKSDVSVLIT 209

Query: 181 GPNGAGKDKLADIIHANSPLKNKPFIKVNVGALPMELLEAELFGAEAGAFTGANKARMGR 240
           GPNGAGKD+LADI+HANSPLK+KPFIKVNVGALPMEL+EAELFGAEAGAFTGA K+R+GR
Sbjct: 210 GPNGAGKDRLADILHANSPLKDKPFIKVNVGALPMELMEAELFGAEAGAFTGATKSRIGR 269

Query: 241 FEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHKTLKVKVRVISATNADLAQD 300
           FEAA+GGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSH+T K KVRV+SATNADL QD
Sbjct: 270 FEAANGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHQTRKCKVRVLSATNADLRQD 329

Query: 301 IAEGRFREDLFYRLNVIELALPPLNQRIDDILPLVKHFVGEGFSLSKPAQQALLQHRWPG 360
           I  GRFREDLFYRLNV+ELALPPL +R DD+LPLV+HF   G +L   A+ ALL H WPG
Sbjct: 330 IQTGRFREDLFYRLNVVELALPPLCERRDDVLPLVQHFT-RGRALDASAKAALLAHSWPG 388

Query: 361 NVRELENACKRAALLAQSRVLTEADFGLPPVQARQLSATNAFALGQAAHLAAAFEPQSHQ 420
           NVRELENACKRA +LA+  +L+  DFGL P Q  Q           A + +     ++H 
Sbjct: 389 NVRELENACKRADILARGEMLSAVDFGLMPTQTPQ----------PAVNQSGISSNEAHH 438

Query: 421 SVFYSEIHSEAQDV----SREDIEAALQQHNGVIARVAKSLGLSRQALYRRMDKFGLE 474
           +  ++ +  E++ V    +R +IEAA+  HNGVIARVAKS GLSRQALYRRM+KFG+E
Sbjct: 439 NEPFNTLLPESEPVNTAPNRSEIEAAITAHNGVIARVAKSFGLSRQALYRRMEKFGIE 496