Pairwise Alignments

Query, 475 a.a., sigma-54 dependent nitrogen response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 481 a.a., Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI) from Rhodospirillum rubrum S1H

 Score =  277 bits (708), Expect = 6e-79
 Identities = 176/483 (36%), Positives = 263/483 (54%), Gaps = 30/483 (6%)

Query: 1   MDTILIVDDNHAICQALGLMLEINGYQVLTCHTPDDALNLIAAHDIDLVIQDMNFTRDTT 60
           M TIL+ DD+  I   L   L   G++V +  T     + +     DLVI D+       
Sbjct: 1   MSTILVADDDRGIRTVLSQALTRAGHEVRSTGTASTLWSWVTDGQGDLVITDV-----IM 55

Query: 61  SGEEGRQLFYALRERQPDLPIILMTAWTQLETAVELVKVGAADYMGKPWDDAKLLNSITN 120
             E G  L   +++ +PDL I++M+A   L TAV+  + GA +Y+ KP+D  +++N +  
Sbjct: 56  PDENGLDLIPRIKKIRPDLRIVVMSAQNTLLTAVKATERGAFEYLPKPFDLTEVVNVVRR 115

Query: 121 LVALYKLACTNHQLERVNSQRQVAIADAELCGIVFGSGAMQRCIDLALQLARSDVSVLIT 180
            ++L +   T         +   A  + E   ++  S AMQ       +L  +D++V+I 
Sbjct: 116 ALSLPRGNPT---------EGDHASEEDERLPLIGRSPAMQEIYRTLARLMNTDLTVMIN 166

Query: 181 GPNGAGKDKLADIIHANSPLKNKPFIKVNVGALPMELLEAELFGAEAGAFTGANKARMGR 240
           G +G GK+ +A  +H     +N  F+ VN+GA+P EL+E+ELFG E GAFTGA+    GR
Sbjct: 167 GESGTGKELVARALHDYGKRRNGSFVAVNMGAIPRELIESELFGHEKGAFTGAHARSAGR 226

Query: 241 FEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHKTLKVKVRVISATNADLAQD 300
           FE ADGGTLFLDEIG++PL  Q +LLRVLQ  E+  +G  +TL+  VR+I+AT+ DL Q 
Sbjct: 227 FEQADGGTLFLDEIGDMPLEAQTRLLRVLQESEYTTVGGRQTLRANVRIIAATHRDLRQL 286

Query: 301 IAEGRFREDLFYRLNVIELALPPLNQRIDDILPLVKHFV-----GEGFS---LSKPAQQA 352
           I +G FREDLFYRLNV+ L LPPL +R++DI  L +HF+      +G     L  PA + 
Sbjct: 287 IHQGLFREDLFYRLNVVPLRLPPLRERVEDIPELTRHFLHAVAEHDGLPPKVLEAPAMER 346

Query: 353 LLQHRWPGNVRELENACKRAALLAQSRVL------TEADFGLPPVQARQLSATNAFALGQ 406
           L +HRW GNVRELEN  +R A L    V+       E     PP+      +    +   
Sbjct: 347 LKKHRWSGNVRELENLVRRLAALYSQEVIGVEVIEAELSSSAPPILDEGDESAEGLSTKV 406

Query: 407 AAHLAAAFEPQSHQSVFYSEIHSE-AQDVSREDIEAALQQHNGVIARVAKSLGLSRQALY 465
             HL   FE    +++  + +H   +++V R  I   L+   G   + A+ LGL+R  L 
Sbjct: 407 ERHLRHYFEAHG-EALPPAGLHERISREVERPLISLCLEATRGNQIKAAQLLGLNRNTLR 465

Query: 466 RRM 468
           +++
Sbjct: 466 KKI 468