Pairwise Alignments

Query, 475 a.a., sigma-54 dependent nitrogen response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 453 a.a., two-component system response regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  296 bits (759), Expect = 7e-85
 Identities = 175/481 (36%), Positives = 274/481 (56%), Gaps = 46/481 (9%)

Query: 3   TILIVDDNHAICQALGLMLEINGYQVLTCHTPDDALNLIAAHDIDLVIQDMNFTRDTTSG 62
           TILIVDDN ++  +L L+LE     V T   P+    L+    ID+VI DMNF+    +G
Sbjct: 5   TILIVDDNKSVLASLELLLENEFGTVRTAANPNQITTLLTTTSIDVVILDMNFSAGINNG 64

Query: 63  EEGRQLFYALRERQPDLPIILMTAWTQLETAVELVKVGAADYMGKPWDDAKLLNSITNLV 122
            EG      + E +P LP++++TA+  +E AV+ +K GA D++ KPWD+  L+  I    
Sbjct: 65  NEGLYWLKQIHEIRPSLPVVMLTAYGDVELAVKALKNGATDFLLKPWDNQILIRKIKEA- 123

Query: 123 ALYKLACTNHQLERVNSQRQVAIADAELCG----IVFGSGAMQRCIDLALQLARSDVSVL 178
             YK   +N+   +  S+      D E       ++  S AM + I +  ++A++D ++L
Sbjct: 124 --YK---SNNSKAKSASKATGKQGDTEKPSKPEMLIGHSPAMLQLIKVVTKVAKTDANIL 178

Query: 179 ITGPNGAGKDKLADIIHANSPLKNKPFIKVNVGALPMELLEAELFGAEAGAFTGANKARM 238
           ITG NG GK+ LA  IH  SP  ++  + +++GA+   L E+ELFG E GAFT A ++R 
Sbjct: 179 ITGENGTGKEMLAKEIHRLSPRNSRQMLGIDMGAISESLFESELFGHERGAFTDAYESRP 238

Query: 239 GRFEAADGGTLFLDEIGNLPLSGQVKLLRVLQTGEFERLGSHKTLKVKVRVISATNADLA 298
           G+FEAA+G +LF+DEIGNL ++ Q KLL VLQ     R+GS+K + V +R+ISATN D+ 
Sbjct: 239 GKFEAANGSSLFMDEIGNLSIALQAKLLTVLQNRNVTRIGSNKVIPVDIRLISATNKDIP 298

Query: 299 QDIAEGRFREDLFYRLNVIELALPPLNQRIDDILPLVKHFVGEGFS--------LSKPAQ 350
           + + +G FREDLFYR+N I L +PPL +R DDIL  +  F+    S        + +   
Sbjct: 299 EMVKQGLFREDLFYRINTIHLEIPPLRERGDDILLFIDTFLRRFTSKYQRPDIRMHEQTI 358

Query: 351 QALLQHRWPGNVRELENACKRAALLAQSRVLTEADFGLPPVQARQLSATNAFALGQAAHL 410
           + L  + WPGN+REL++A ++A +L +  V+   D     +  +Q               
Sbjct: 359 EKLRSYHWPGNIRELQHAIEKAVILCEGNVIRPKD-----ILVKQ--------------- 398

Query: 411 AAAFEPQSHQSVFYSEIHSEAQDVSREDIEAALQQHNGVIARVAKSLGLSRQALYRRMDK 470
             +++PQ+      + +    ++V R+ IE A+ Q+NG +   A+ LG+SRQ LY ++ +
Sbjct: 399 --SWKPQT------ASVVPNLEEVERQAIETAILQNNGNLTAAAEQLGISRQTLYNKLKR 450

Query: 471 F 471
           F
Sbjct: 451 F 451