Pairwise Alignments

Query, 532 a.a., long-chain-fatty-acid--CoA ligase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 541 a.a., Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II from Pseudomonas stutzeri RCH2

 Score =  456 bits (1173), Expect = e-132
 Identities = 241/529 (45%), Positives = 339/529 (64%), Gaps = 8/529 (1%)

Query: 7   SQLELGKYSSLIDLIERTSQRFGDKTAYACLGKNSSFNEIERDSRYFAAYLQNNTNLKPG 66
           ++L  G Y ++ DL+ R       +TA++C   + ++ E+   +  FA YL+ +  L+PG
Sbjct: 11  AELARGSYQNVHDLLSRACATHPQRTAFSCGDDHLTYAELGSRADAFARYLRYHAGLQPG 70

Query: 67  DRIAIQLPNITQFVIAAYGALRAGLILVNTNPLYTERELIHQFNDSGAKALVVLSDLLPT 126
           DR+A+QLPN  Q+ IA +GAL+AGL++VNTNP YT  E  HQF+DSGAKA++VL  LLP 
Sbjct: 71  DRLALQLPNCLQYPIAVFGALKAGLVIVNTNPQYTAAEARHQFHDSGAKAILVLDRLLPQ 130

Query: 127 LAKVVATTPIELVISTHPLDLIDPQVQPKTGLKNVEFCHVLQQGALLPFTRFVPTLSDLA 186
           +  V A T +  +I T   DL  P  + +     + F   L+ G      +    L  LA
Sbjct: 131 VRAVQADTALRQIILTSVDDLQQPIYESQED-GTLRFMQALRLGEQRSPVQREAGLDRLA 189

Query: 187 ALQYTGGTTGLSKGAMLTHGNMLANAAQVKSRIGS--VISEGEDIFVAPLPIYHIYAFMV 244
            LQYTGGTTG+SKGAMLTH N+LAN  Q         ++   +D+ +APLP+YHI AF  
Sbjct: 190 LLQYTGGTTGVSKGAMLTHRNLLANVLQTIELFDQPGLLEPEKDVRIAPLPLYHIMAFAT 249

Query: 245 NLVLYFECGGCSVLIPNPRDINGLIKTLAKYPFTGFAGLNTLFVALCHQPEFKALNFSHL 304
           N +     G  +V I + R+++  I  + ++PF+  +G+NTLFV L + PEF++++FSHL
Sbjct: 250 NCLSSVGMGLHTVFIRDGRNLDETIGAMQRHPFSLLSGINTLFVGLMNHPEFRSIDFSHL 309

Query: 305 KITISGGTALTAAAANLWQQTTGNTISEGYGLSETSPVISLNAP-GYQKIGTIGKPVLGT 363
           K   SGG  L +     WQ  TG  I EG+GL+E SPV++        + G IG+ ++ T
Sbjct: 310 KWATSGGAPLNSEVGRRWQALTGAPIREGFGLTEASPVVATGTQLSPYREGYIGQALIET 369

Query: 364 EVKLLDESGNEVTQGTAGELAARGPQVMLGYWNNPQETANVMTPDGFFKTGDIAILNEEG 423
           E++ +D+ GN+V   T GEL  RGPQVM GYW  P ETA V+TPDG+ KTGDIA+L+ +G
Sbjct: 370 ELRTVDDEGNDVPPETPGELWLRGPQVMQGYWQRPDETAKVLTPDGWLKTGDIALLDVDG 429

Query: 424 FHQIVDRKKDMIIVSGFNVYPNEVENVLASHPNIIECAVVGVKDDHSGEAVKAFIVLKDD 483
           F +IVDRKKDMI+VSGFNV+PNE+E+VL  HP++ EC  VGV D   GEAVK F+ LKDD
Sbjct: 430 FVKIVDRKKDMILVSGFNVFPNEIEDVLMQHPSVRECVAVGVPDARKGEAVKVFVSLKDD 489

Query: 484 SQDHEKIKTAILNFCREQLTAYKLPKQIEFMSQLPKSTVGKILRRELKN 532
           + D    + A+L  CR+ LT YK+P  +E   +LPK+ VGK+LRR+L++
Sbjct: 490 TVD----ERALLEHCRQYLTGYKMPSFLELRDELPKTAVGKLLRRQLRD 534