Pairwise Alignments

Query, 532 a.a., long-chain-fatty-acid--CoA ligase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 559 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Acidovorax sp. GW101-3H11

 Score =  473 bits (1216), Expect = e-137
 Identities = 256/554 (46%), Positives = 354/554 (63%), Gaps = 28/554 (5%)

Query: 2   AYDQ--ESQLELGKYSSLIDLIERTSQRFGDKTAYACLGKNSSFNEIERDSRYFAAYLQN 59
           AY Q   + ++  +Y+SL+ L++   +++ D+ AY+ +GK  ++ + +  S  FAAYLQ+
Sbjct: 9   AYPQGVPADIDTSQYTSLVALMDEAFKKYADRVAYSFMGKEVTYGQTDSLSSAFAAYLQS 68

Query: 60  NTNLKPGDRIAIQLPNITQFVIAAYGALRAGLILVNTNPLYTERELIHQFNDSGAKALVV 119
              L  GDR+AI +PN+ Q+ +A    LRAG ++VN NPLYT REL HQ  DSGAKA+V+
Sbjct: 69  -LGLVKGDRVAIMMPNVPQYPVAVAAVLRAGFVVVNVNPLYTPRELEHQLKDSGAKAIVI 127

Query: 120 LSDLLPTLAKVVATTPIELVISTHPLDLID--------------PQVQPKTGLKN-VEFC 164
           + +   TL + +A TP++ V+     D +                ++ P   L   V F 
Sbjct: 128 IENFAATLEQCIAHTPVKHVVLCAMGDQLGLLKGALVNYVVRNVKKMVPAYNLPGAVRFN 187

Query: 165 HVLQQGALLPFTRFVPTLSDLAALQYTGGTTGLSKGAMLTHGNMLANAAQVK---SRIGS 221
             + QG      +      D+A LQYTGGTTG+SKGA+L H N+LAN  Q +   S + S
Sbjct: 188 QAVAQGTRSTLKKPDIKPDDIALLQYTGGTTGVSKGAVLLHRNILANVLQSEAWNSPVMS 247

Query: 222 VISEGED-IFVAPLPIYHIYAFMVNLVLYFECGGCSVLIPNPRDINGLIKTLAKYPFTGF 280
            +  GE    V  LP+YHI+AF VN++L    GG ++LIPNPRD+  ++K L+K+ F  F
Sbjct: 248 KVPAGEQPTAVCALPLYHIFAFTVNMMLSMRTGGKTILIPNPRDLPAVLKELSKHTFHSF 307

Query: 281 AGLNTLFVALCHQPEFKALNFSHLKITISGGTALTAAAANLWQQTTGNTISEGYGLSETS 340
             +NTLF  L + P+F  +N+ +LK+++ GG A+  A A LW + TG  I EGYGLSETS
Sbjct: 308 PAVNTLFNGLANHPDFNTVNWKNLKVSVGGGMAVQGAVAKLWLEKTGCPICEGYGLSETS 367

Query: 341 PVISLN-APGYQKIGTIGKPVLGTEVKLLDESGNEVTQ-GTAGELAARGPQVMLGYWNNP 398
           P  S N     +  GTIG P+ GT +KL+D+ G E+T  G  GE+A +GPQVM GYW  P
Sbjct: 368 PSTSCNPVTATEYTGTIGVPIPGTYMKLIDDEGREITTLGEPGEIAIKGPQVMAGYWQRP 427

Query: 399 QETANVMTPDGFFKTGDIAILNEEGFHQIVDRKKDMIIVSGFNVYPNEVENVLASHPNII 458
            ETA VMT DG+FK+GDI I++  GF +IVDRKKDM++VSGFNVYPNEVE V+AS P ++
Sbjct: 428 DETAKVMTDDGYFKSGDIGIMDARGFFKIVDRKKDMVLVSGFNVYPNEVEEVVASCPGVL 487

Query: 459 ECAVVGVKDDHSGEAVKAFIVLKDDSQDHEKIKTAILNFCREQLTAYKLPKQIEFMSQLP 518
           ECAVVGV D+ +GEAVK  IV KD +    ++K     FCR +LT YK PK IEF ++LP
Sbjct: 488 ECAVVGVPDEKTGEAVKLVIVKKDPALTEAQVK----EFCRRELTGYKQPKVIEFRTELP 543

Query: 519 KSTVGKILRRELKN 532
           K+ VGKILRREL++
Sbjct: 544 KTPVGKILRRELRD 557