Pairwise Alignments

Query, 269 a.a., ISSod1, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 279 a.a., IS3 family transposase (RefSeq) from Shewanella amazonensis SB2B

 Score =  183 bits (464), Expect = 4e-51
 Identities = 104/259 (40%), Positives = 147/259 (56%), Gaps = 4/259 (1%)

Query: 3   VSKSGYYDWHKRPANVISVETLKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRYLV 62
           V  SGYY W     +    +  +L   ++Q + +S G  G R++ + LR  G Q G   V
Sbjct: 10  VHPSGYYAWRSCAKSKRQRDNERLTGQLKQCWLESGGVYGYRKLHRDLRDLGEQCGINRV 69

Query: 63  RKIMHRLRLKATQRCAYKVTTQRK-HSDAVADNLLNMNFNPVSANQVWAGDVTYLKTGEG 121
            ++M R  L+A  +  Y+    R      V  N L   FNP++ NQ W  D+TY+KT EG
Sbjct: 70  YRLMQRAGLRA--QVGYRKPRARSGEPHVVTPNRLERQFNPLAPNQAWVTDITYIKTHEG 127

Query: 122 WMYLAVVMDLYSRRIVGWRIDKRMTTDLISKALIKAYNLRQPARGLVFHSDRGSQYTSKQ 181
           W+YL  VMDL+SR I+GW +  R+T +L   AL+ A   R+P   ++ HSD+GSQYTS  
Sbjct: 128 WLYLGAVMDLFSRHIIGWSMGSRITKELALDALLMAVWRRKPDGNVLVHSDQGSQYTSHD 187

Query: 182 FGRLLSSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVAQPTREFMKQDVTAYIK-Y 240
           +   LS++G+  SM   G C DNAV E FF  LK + I +    TR   K DV  YI+ +
Sbjct: 188 WNEFLSAHGLEGSMSRRGNCHDNAVAESFFQLLKRERIRRKIYATRNEAKMDVFNYIEMF 247

Query: 241 YNLERLHSANNDLSPVEFE 259
           YN +R HS+N+ LSP+E+E
Sbjct: 248 YNPKRQHSSNDGLSPLEYE 266