Pairwise Alignments

Query, 378 a.a., secretion protein, HlyD family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 381 a.a., HlyD family secretion protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  544 bits (1402), Expect = e-159
 Identities = 258/370 (69%), Positives = 318/370 (85%)

Query: 9   LCIVIFKVFKIPMNKWTVPTAVLGGVFLIGALLLIMNYNHPYSRFAREYYVTIPITPAVK 68
           +C+VIFKVFKIP+NKWTVPTAVLGG+ L+G LLL+MNYNHPYSRFAREY+VT+PI P V 
Sbjct: 12  ICVVIFKVFKIPLNKWTVPTAVLGGIVLLGTLLLLMNYNHPYSRFAREYFVTVPINPLVT 71

Query: 69  GLVISVDVKPNTFIKQGDVLFRIDPTPYQAVVKTKKAALLAAEQEVPQLKAAWESAKANV 128
           G V+ V V PN  I++G+VLFR+DP P+++ +  K+AAL AAEQEVPQL+AAWE+A+A+V
Sbjct: 72  GKVVEVAVMPNVPIREGEVLFRLDPRPFESALIQKQAALKAAEQEVPQLEAAWETARASV 131

Query: 129 ARVAADRERNKSAYDRYEQGHRKGGANSPFTALELDNKRQLYLASDAQLTAVQAEELRAR 188
            R  ADR+R+KS Y+RYE G RKGGANSPFTALELDNKRQLY A++AQLTA +AEE+R R
Sbjct: 132 ERAQADRDRSKSEYERYEAGRRKGGANSPFTALELDNKRQLYFAAEAQLTAARAEEMRVR 191

Query: 189 LAYESNVDGVNSKVAGLQGDLENALYNLEQTVVRAPADGIVTQMALRPGAMAVPLPLRPV 248
            AYESN+DGVN+KVA  + ++  A ++LEQ+VVRAP DG+VT MALRPG + VP+PLRPV
Sbjct: 192 YAYESNIDGVNTKVAAARAEVAKAEFDLEQSVVRAPTDGVVTHMALRPGMVVVPMPLRPV 251

Query: 249 MNFIPDEQRYFAGAFWQNSLLRLQEGDEAEVVLDAVPGKVFKGKVAKVLPAMAEGEIQMN 308
           M+FIP+EQRYF GAFWQNS+LRL+ GD+AEV+LDA PG+VFKG+VA+VLPAMAEGE+Q N
Sbjct: 252 MSFIPNEQRYFVGAFWQNSMLRLKAGDQAEVILDAAPGQVFKGRVARVLPAMAEGEVQAN 311

Query: 309 GTLQSSNQLFQTGRVIVLIDIEDDAIRREFPAGVAGQVAVYTEHFHHVAVMRKVLLRMQG 368
           G LQSS ++FQ GRV+V+I+ +     + FPAGVAGQVA+YT+HF HVAVMRKVLLRMQG
Sbjct: 312 GQLQSSARMFQRGRVLVMIEFDRSDEIQAFPAGVAGQVAIYTDHFSHVAVMRKVLLRMQG 371

Query: 369 WLNYLFFDGH 378
           WLNYLF +GH
Sbjct: 372 WLNYLFGEGH 381