Pairwise Alignments

Query, 378 a.a., secretion protein, HlyD family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 354 a.a., multidrug resistance efflux pump (RefSeq) from Shewanella amazonensis SB2B

 Score =  101 bits (251), Expect = 4e-26
 Identities = 73/236 (30%), Positives = 117/236 (49%), Gaps = 7/236 (2%)

Query: 61  IPITPAVKGLVISVDVKPNTFIKQGDVLFRIDPTPYQAVVKTKKAALLAAEQEVPQLKAA 120
           + ITP V G ++ V+V  +  ++ G++LF ID T YQ   +  +A L    Q +    AA
Sbjct: 46  VRITPEVAGNIVQVNVDNDKRVEAGELLFEIDATQYQIAREKAQADLERVGQSLGASTAA 105

Query: 121 WESAKANVARVAADRERNKSAYDRYEQGHRKGGANSPFTALELDNKRQLYLASDAQLTAV 180
            + A+A V    A  +  K+   R E    +G      +  ELDN R+    + A L A 
Sbjct: 106 VQVAQAKVGDARAALDNAKAQATRVETLAERG----VLSQAELDNAREAAQRAQASLEAA 161

Query: 181 QAEELRARLAYESNVDGVNSKVAGLQGDLENALYNLEQTVVRAPADGIVTQMALRPGAMA 240
           QA  L+A+      V   N ++      L  A  +L++T V AP+ G+VT + L PG   
Sbjct: 162 QASLLQAKQNL-GPVGENNPELKAAMAALAKAELDLKRTRVVAPSRGVVTNVQLSPGQYM 220

Query: 241 VPLPLRPVMNFIPDEQRYFAGAFWQNSLLRLQEGDEAEVVLDAVPGKVFKGKVAKV 296
              P +P + FI   + + +    +NSL  ++EG +  +V DA+PG+VF+G V  +
Sbjct: 221 A--PGQPALTFIDPREVWISAMMRENSLEHIREGGKVGLVFDALPGRVFEGVVDSI 274