Pairwise Alignments

Query, 378 a.a., secretion protein, HlyD family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 359 a.a., secretion protein HlyD from Pedobacter sp. GW460-11-11-14-LB5

 Score = 75.9 bits (185), Expect = 2e-18
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 40/300 (13%)

Query: 30  VLGGVFLIGALLLIMNYNHPYSRFAREYYVTI-----PITPAVKGLVISVDVKPNTFIKQ 84
           +LG + +IG +  I  +N+ YS+        I     P+   V G V  ++ + NT + +
Sbjct: 15  ILGVLLVIGIIFGITEWNY-YSKHVDTDDAQIDGDISPVVARVGGYVKDINFEENTHVTE 73

Query: 85  GDVLFRIDPTPYQ--------------AVVKTKKAALLAAEQEVPQLKAAWESAKANVAR 130
           G +L ++D   Y+              A V   ++ ++A +      KA  ++AK+NV  
Sbjct: 74  GQILVKLDDNDYKVKLEQAQSGQKGASAGVGVAESQIVATQANTGTAKANVDAAKSNVQA 133

Query: 131 VAADRERNKSAYDRYEQGHRKGGANSPFTALELDNKRQLYLASDAQLTAVQAEE------ 184
                   +  Y+RYE   + G            NK     A  + L A +A +      
Sbjct: 134 ANVKVNLAQKDYNRYENLVKDGSITQQAFDQAKANKESAEAARQSALAAYRAAQDQYNAA 193

Query: 185 ------LRARLAYESNVDGVNSKVAGLQGDLENALYNLEQTVVRAPADGIVTQMALRPGA 238
                  +++LA  SNV      ++  Q D++ A   L  T ++APA GIV++  ++ G 
Sbjct: 194 VKQVGTTQSQLAVSSNV------ISQRQSDIDFAKLQLSYTDIKAPATGIVSKKNVQKGQ 247

Query: 239 MAVPLPLRPVMNFIPDEQRYFAGAFWQNSLLRLQEGDEAEVVLDAVPGKVFKGKVAKVLP 298
           +      + + + + D   Y    F +  L +++EG + E+ +DA P +   G+V    P
Sbjct: 248 LVQAG--QSLFSIVNDGSIYVTANFKETQLEKIKEGSKVEIEVDAYPDEKIHGEVYNFSP 305