Pairwise Alignments

Query, 378 a.a., secretion protein, HlyD family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 443 a.a., secretion protein HlyD family protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 86.7 bits (213), Expect = 1e-21
 Identities = 80/279 (28%), Positives = 120/279 (43%), Gaps = 47/279 (16%)

Query: 63  ITPAVKGLVISVDVKPNTFIKQGDVLFRIDPTPYQAVVKTKKAALLAAEQEVP------- 115
           ++P V G V+ V V+ N F+K+G+VL R+DPT Y+  V   +A L A ++ VP       
Sbjct: 51  VSPRVAGYVVDVPVEDNQFVKEGEVLARLDPTEYEVAVAEARAQLAALQRGVPLELSQTV 110

Query: 116 -------------QLKAAWESAKANVARVAADR---ERNKSAYDRYEQGHRKG-GANSPF 158
                        + +AA    + + AR   +R   E+ ++A DR       G GA S  
Sbjct: 111 HRVTGAQAVEEATKRRAAQARDEEDAARYEMERLSTEQAQAALDRRRLESLVGQGAVSRE 170

Query: 159 TA-----------LELDNKRQLYLASDAQLTAVQAEELRARLAYESNVDGVNSKVAGL-- 205
            A             L++ R    A+     A +AE  R R   E ++ G    VA +  
Sbjct: 171 AADRARSTDDAAKARLESSRAKLEAASKARAAAEAEMRRVRA--EVDLAGTGQVVAEIRA 228

Query: 206 ------QGDLENALYNLEQTVVRAPADGIVTQMALRPGAMAV-PLPLRPVMNFIPDEQRY 258
                 Q  +  A  NLE T VRAP DG VT+  + PG M     P+  V+   PD   +
Sbjct: 229 RQVEAQQAKVRQAELNLEWTTVRAPVDGYVTKKNVEPGRMVTRGQPIMAVVPMSPD-HLW 287

Query: 259 FAGAFWQNSLLRLQEGDEAEVVLDAVPGKVFKGKVAKVL 297
               F +  L  ++ G   E+ +D  P  V KG V  ++
Sbjct: 288 VTANFKETELTDVKPGQPCEIRVDTYPNLVLKGLVESIM 326