Pairwise Alignments

Query, 378 a.a., secretion protein, HlyD family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 365 a.a., secretion protein HlyD family protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  117 bits (293), Expect = 5e-31
 Identities = 100/357 (28%), Positives = 161/357 (45%), Gaps = 17/357 (4%)

Query: 25  TVPTAVLGGVFLIGALLLIMNYNHPYSRFAREYYVTIPITPAVKGLVISVDVKPNTFIKQ 84
           TV   V+  + LI  L  +M+   P S         + I P V G +  V V  +  ++ 
Sbjct: 17  TVALVVVVALVLIAGLYALMDRYVPSSPRGIVSANVVQIAPRVSGTITRVHVADDAIVEA 76

Query: 85  GDVLFRIDPTPYQAVVKTKKAALLAAEQEVPQLKAAWESAKANVARVAADRERNKSAYDR 144
           GD LF +DP P++  V+  +A L  A Q V    A+  +A+A V +     E  ++  DR
Sbjct: 77  GDPLFSLDPRPFELAVRQAEANLNTALQTVDASGASLVAAQAAVTQARTALENTQAEADR 136

Query: 145 YEQGHRKGGANSPFTALELDNKRQLYLASDAQLTAVQA--EELRARLAYESNVDGVNSKV 202
             Q   +G           D+ R    ++ AQL   +A  +  RA+L  E      N  +
Sbjct: 137 TFQLEERG----IVATARGDDARAAVESAQAQLDQAEANLDSARAQLGPEG---ADNPTI 189

Query: 203 AGLQGDLENALYNLEQTVVRAPADGIVTQMALRPGAMAVPLPLRPVMNFIPDEQRYFAGA 262
                 LE A Y+L  T V AP  G+VT + L  G         P + FI  E  +    
Sbjct: 190 QAATAQLEQAQYDLASTTVTAPHLGVVTNVTLSEGQFIG--AGSPALTFIDAEAGWITVD 247

Query: 263 FWQNSLLRLQEGDEAEVVLDAVPGKVFKGKVAKVLPAMAEGEIQMNGTL--QSSNQLFQT 320
             +N L +++ GD A V+ DA+PG++F+G+V  +   +A       G +  Q + Q F+ 
Sbjct: 248 LRENQLQKIEAGDPARVLFDALPGRIFEGRVQSIAWGIAPRRTVQGGLVANQQTTQWFEP 307

Query: 321 GRVI-VLIDIEDDAIRREFPAGVAGQV--AVYTE-HFHHVAVMRKVLLRMQGWLNYL 373
            R I V I++E       +   V G+V   +++E     +A + + L R++ WL+YL
Sbjct: 308 ARTIPVRIELEGGMENWPYAVRVGGKVHAVIFSESETGPIAWVARGLQRLRSWLSYL 364