Pairwise Alignments

Query, 378 a.a., secretion protein, HlyD family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 352 a.a., membrane fusion protein, multidrug efflux system from Paraburkholderia bryophila 376MFSha3.1

 Score =  108 bits (270), Expect = 2e-28
 Identities = 86/291 (29%), Positives = 141/291 (48%), Gaps = 9/291 (3%)

Query: 27  PTAVLGGVFLIGALLLIMNYNH-PYSRFAREYYVTIPITPAVKGLVISVDVKPNTFIKQG 85
           P  +L  V L+  + +I   +  P +  A  Y  TI + P V G ++ + V+ N  +KQG
Sbjct: 14  PAIILVVVTLLLLIFVIRQLDREPRTDDAYVYADTIDVVPEVNGRIVELAVRDNQAVKQG 73

Query: 86  DVLFRIDPTPYQAVVKTKKAALLAAEQEVPQLKAAWESAKANVARVAADRERNKSAYDRY 145
           D+LFRIDP PYQ  +   KA+L+A ++++   +    + + N   V A  ER ++A  + 
Sbjct: 74  DLLFRIDPRPYQDALARGKASLVALDRQIELTQRTVNAQQYNAQSVRAVVERARAAATQA 133

Query: 146 EQGHRKGG---ANSPFTALELDNKRQLYLASDAQLTAVQAEELRARLAYESNVDGVNSKV 202
               R+     ++   +A E+D  R    A+ A+L+A Q +  +A  A  S VD + ++ 
Sbjct: 134 SDTLRRMEPLLSHGYVSAEEVDRARAAQRATQAELSAAQLQAQQAAAAV-SGVDALVAQR 192

Query: 203 AGLQGDLENALYNLEQTVVRAPADGIVTQMALRPGAMAVPLPLRPVMNFIPDEQRYFAGA 262
           A +  ++  A  NLE   VRAP DG +  +    G  A    L+PV   I     Y    
Sbjct: 193 AAVMAEIAIADLNLEYATVRAPFDGRIVSLKSSTGQFA--SVLKPVFTLIDTRHWYVVAN 250

Query: 263 FWQNSLLRLQEGDEAEVVLDAVPGKVFKGKVAKVLPAMA--EGEIQMNGTL 311
           F +  L  ++ G  A V L +  G+ F+G V  +   +A  EG + + G L
Sbjct: 251 FRETELKDIRTGTPATVYLMSDTGQRFQGTVDSISYGVAPDEGGLALPGGL 301