Pairwise Alignments

Query, 378 a.a., secretion protein, HlyD family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 352 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella sp. ANA-3

 Score = 99.8 bits (247), Expect = 1e-25
 Identities = 88/355 (24%), Positives = 160/355 (45%), Gaps = 19/355 (5%)

Query: 26  VPTAVLGGVFLIGALLLIMNYNHPYSRFAREYYVTIPITPAVKGLVISVDVKPNTFIKQG 85
           V  A+ G V + G   +  +   P +  A    V   +TP + G + +++VK N  + +G
Sbjct: 11  VKIAMFGFVAVFG-YFMFADAMMPLTPQAMATRVVTKVTPQISGKIQTINVKNNQVVAKG 69

Query: 86  DVLFRIDPTPYQAVVKTKKAALLAAEQEVPQLKAAWESAKANV---ARVAADRERNKSAY 142
           D+LF++DP P++  V   K AL    Q+  +L A+  +AKA V      A  + R     
Sbjct: 70  DLLFQVDPAPFELAVSQAKLALEQVRQDNAELDASLLAAKAEVNASTTTAQLKRREAKRL 129

Query: 143 DRYEQGHRKGGANSPFTALELDNKRQLYLASDAQLTAVQAEELRARLAYESNVDGVNSKV 202
           D     H            + D      LA++A+L  ++     +R  Y       N +V
Sbjct: 130 DALYATHGVSQQQRDQADSDADAAEANLLAANARLDKLKV----SRGLYGEE----NLRV 181

Query: 203 AGLQGDLENALYNLEQTVVRAPADGIVTQMALRPGAMAVPLPLRPVMNFIPDEQRYFAGA 262
              +  LE A  NL  T +RA  DG+VT + L  G+ A     +P++  + D+    A  
Sbjct: 182 RQAKNALEQAELNLSYTQIRADQDGVVTNLQLEVGSFAA--VGQPLLALVSDKLDIIAD- 238

Query: 263 FWQNSLLRLQEGDEAEVVLDAVPGKVFKGKVAKVLPAMAEGEIQMNGTL---QSSNQLFQ 319
           F + +L  +     A +  D  PG++++ +V+ V   ++ G+   NG L   Q S++  +
Sbjct: 239 FREKTLRGVNASYPALIAFDGEPGRLYRAQVSSVDAGVSAGQFDANGRLAAPQESDRWVR 298

Query: 320 TGRVIVLIDIEDDAIRREFPAGVAGQVAVYTEHFHHVAVMRKVLLRMQGWLNYLF 374
             + + L  + DD      PAG    V +  ++    +++ KV +++   L+Y++
Sbjct: 299 DAQRLRLHLVLDDNAMNNLPAGARATVQLLPDN-TLFSLLAKVQIKVISLLHYIY 352