Pairwise Alignments

Query, 378 a.a., secretion protein, HlyD family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 364 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella sp. ANA-3

 Score = 95.1 bits (235), Expect = 3e-24
 Identities = 96/358 (26%), Positives = 163/358 (45%), Gaps = 20/358 (5%)

Query: 29  AVLGGVFLIGALLL---IMNYNHPYSRFAREYYVTIPITPAVKGLVISVDVKPNTFIKQG 85
           A LG + LI  LLL   + +   PYS  AR     +PI   V G ++ V V+ N  + +G
Sbjct: 15  ATLGLLALIVILLLWYLVADRMTPYSSQARVQAFVVPIATEVTGQILKVYVQDNQDVAEG 74

Query: 86  DVLFRIDPTPYQAVVKTKKAALLAAEQEVPQLKAAWESAKANVARVAADR-ERNKSAYD- 143
             LF IDP PY   +   K+     E  +  +KA  E  KA  A++ A R   N S  D 
Sbjct: 75  APLFDIDPEPYDIALAKAKSDY---ETVLNSVKANNEGVKAAEAKLQAMRASYNNSVKDA 131

Query: 144 -RYEQGHRKGGANSPFTALELDNKRQLYLASDAQLTAVQAEELRARLAYESNVDGVNSKV 202
            R E+ +R+         LE+    +    + +Q+TA +A+  RA  A   N +  NS++
Sbjct: 132 ERQERLYRQDPGAISVRRLEIAQASR--ETASSQVTAAEADVRRAIEAAGVNGEN-NSQL 188

Query: 203 AGLQGDLENALYNLEQTVVRAPADGIVTQMALRPGAMAVPLPLRPVMNFIPDEQRYFAGA 262
              +  +  A  + + T V AP+ G++T +    G         P M  I     + +  
Sbjct: 189 LSARSAVNKAERDRQNTHVVAPSRGVITDLNTDVGQFI--NAGAPAMTLIAIHDVWISAD 246

Query: 263 FWQNSLLRLQEGDEAEVVLDAVPGKVFKGKVAKVLPAMAEGEIQMNGTL----QSSNQLF 318
             +N+L  ++ G+   ++LD++PG++F G++  +   + +G+ Q  G+L     S + L 
Sbjct: 247 LTENNLGNIKVGNRVSILLDSMPGQLFSGQIRSIGYGVDDGKKQAVGSLPTVSNSRDWLR 306

Query: 319 QTGRVIVLIDIEDDAIRREFPAGVAGQ--VAVYTEHFHHVAVMRKVLLRMQGWLNYLF 374
           Q  R  V +    D +       V GQ  + VYTE    +  +  + +R+    +YL+
Sbjct: 307 QAQRFPVKVSFSADDMPPAANLRVGGQADILVYTEEHGLMNPLGALYIRVMSLFSYLY 364