Pairwise Alignments

Query, 346 a.a., ISSod13, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 349 a.a., ISDvu4, transposase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  285 bits (728), Expect = 2e-81
 Identities = 140/330 (42%), Positives = 209/330 (63%), Gaps = 4/330 (1%)

Query: 8   IIKHKTGLLNLAEELSNVSRACKVMGVSRDTFYRYRELVDDGGVDALIEK--SRRSPNLK 65
           + + K  LL LA EL NVS+AC++MG SR  FY  R      G + L+++    R P+  
Sbjct: 7   VARRKLSLLELASELDNVSKACRIMGYSRQQFYEIRRNYQTFGAEGLVDRLPGPREPH-P 65

Query: 66  NRVEEAVEQAVMEYAIEFPAHGQHRTSNELRKKGVFVSGSGVRSIWLRHDLENFKKRLKA 125
           NRV+EA E  ++ Y++EFP HG  R + +L  +GV VS  GVR +W R+ +    +RL  
Sbjct: 66  NRVDEATEDRILAYSLEFPTHGPVRVAQQLVLQGVQVSSGGVRGVWSRNGMLTRHERLLR 125

Query: 126 LEAKVARDGIQLTDEQIAALERKKHDDEACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQ 185
           LE  V   GI L D+Q+  LER   +      IET   G L + DTF+VG LKGVG+IY 
Sbjct: 126 LERHVRDTGIALNDDQVRTLERFSPEFRE-RHIETRCSGDLVAVDTFFVGTLKGVGKIYL 184

Query: 186 QTYVDTYCKVAHCKLYTTKTPITAADLLNDKVLPFYESQQLPVLRILTDRGTEYCGKVEH 245
           Q+ +D + + A  +LYT+K P+TA  +LN+ VLPF+E    PV+ +L+D G E+CG+ + 
Sbjct: 185 QSAIDCHSRYAFGRLYTSKLPVTAVHMLNESVLPFFEEHDTPVVTVLSDNGREFCGRPDR 244

Query: 246 HDYQLYLAINDIDHTKTKAMSPQTNGICERFHKTILNEFYQVTFRKKLYQTLEELQKDLD 305
           H Y+L+L + +I+H  T+   PQ+NG  ER H+T+L+E +++  RK  Y++L+E+Q DLD
Sbjct: 245 HPYELFLQLENIEHRTTRVRRPQSNGFVERLHRTLLDEHFRIQGRKNWYESLDEMQADLD 304

Query: 306 EWLSYYNNERTHQGKMCNGRTPVETLIDGK 335
            +L +YN+ER HQG+  +GRTP +  +D +
Sbjct: 305 AYLRHYNHERAHQGRNMSGRTPYQAFLDSR 334