Pairwise Alignments

Query, 940 a.a., isoleucyl-tRNA synthetase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1005 a.a., isoleucine--tRNA ligase from Rhodopseudomonas palustris CGA009

 Score =  692 bits (1787), Expect = 0.0
 Identities = 415/996 (41%), Positives = 556/996 (55%), Gaps = 92/996 (9%)

Query: 2   SDYKFTLNLPETEFPMRGNLANREPEMLERWTKDGLYQQIRDSRIGRTPFILHDGPPYAN 61
           +DY  TL LP+TEFPMR  L  REPE+L+RW +  LY ++R+S  GR  F+LHDGPPYAN
Sbjct: 14  NDYSKTLFLPQTEFPMRAGLPQREPELLKRWEEMDLYGKLRESARGRAKFVLHDGPPYAN 73

Query: 62  GSIHIGHSVNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEQK------VGKPGQ 115
           G+IHIGH++NKILKD++ KS+ M GFD+ YVPGWDCHGLPIE K+E++        KP  
Sbjct: 74  GNIHIGHALNKILKDVVTKSQQMLGFDSNYVPGWDCHGLPIEWKIEEENYRSKGKPKPNF 133

Query: 116 KISAA--EFREECRKYAAEQVDGQREDFIRLGVLGDWQNPYLTMDFATEANIVRSLSKVI 173
           K SAA   FR+ECR YA + ++ QRE+F RLGV+GDW +PY TM++A EA I R L K  
Sbjct: 134 KDSAAIIAFRKECRAYADKWLNVQREEFKRLGVIGDWDHPYATMNYAAEAQIARELMKFA 193

Query: 174 ENGHLHKGVKPVHWCTDCGSALAEAEVEYEDKTSPAIDVAFTAVDSKAVAVKFGVSDYSH 233
            NG L++G KPV W     +ALAEAEVEYED TS  + V F         VK G +  + 
Sbjct: 194 ANGTLYRGSKPVMWSVVEKTALAEAEVEYEDYTSDTVWVKF--------PVKTGDAS-TK 244

Query: 234 SVSMVIWTTTPWTLPANRALSISPELDYSLVE--------FVKDGVTHAVILADVLVEAC 285
             S+VIWTTTPWTLP NRA+S S ++ Y L +        + K G    +ILAD L E+ 
Sbjct: 245 DASVVIWTTTPWTLPGNRAISFSSKIAYGLYKVTDAPADNWAKTG--DLLILADGLAESV 302

Query: 286 MTRYGAESHSVLAKIKGAALELVRFKHPF------LAFDVPAILGDHVTTDAGTGVVHTA 339
             +    ++  ++ +    L+     HP         F VP + GDHVT D GTG VHTA
Sbjct: 303 FKQARVVAYEKVSDVGADVLKASECAHPLQGLAGGYEFTVPLLDGDHVTDDTGTGFVHTA 362

Query: 340 PGHGQDDFVVG-------QKYGLEVANP--VGDNGVYKPDTEFFAGQHVFK-------AN 383
           PGHG++DF +        +  G+    P  V +NG        F G+ V         AN
Sbjct: 363 PGHGREDFDIWMHNARALEARGISSVIPYTVDENGALTEQAPGFTGKRVINDKGEKGDAN 422

Query: 384 DNVVALLKEKGALLHHVAYRHSYPHCWRHKTPIIFRATPQWFISMD-----------NHN 432
           + V+  L  +GALL     +H YPH WR K P+IFR TPQWFI+MD              
Sbjct: 423 EAVIQALIARGALLARGKLKHQYPHSWRSKKPVIFRNTPQWFIAMDKDIVDDGVAKPGDT 482

Query: 433 LRKQALSEIEQIQWIPDWGQSRIEKMVENRPDWCISRQRTWGVPITLFVHRETE---ELH 489
           LR +AL  I   QW+P  GQ+RI  M+  RPDW ISRQR WGVPI +F+  + +   E+ 
Sbjct: 483 LRARALQAISVTQWVPPAGQNRINGMISGRPDWVISRQRAWGVPIAVFIKDKGDGSVEIL 542

Query: 490 PDSVSLMARVANRIEQEGIQAWWDLDAAE-LLGEE-AEQYRKVTDTLDVWYDSGSTFASV 547
            D + +  R+A    QEG  AW+   AAE  LG+  AE +RKV D LDVW+DSGST A V
Sbjct: 543 QDEI-VNQRIAEAFMQEGADAWYAEGAAERFLGDRAAEGWRKVDDILDVWFDSGSTHAFV 601

Query: 548 VAARPEFHG---------HGVD--LYLEGSDQHRGWFMSSLMISTAMTGKAPYKQVLTHG 596
           +     F G          G D  +YLEGSDQHRGWF SSL+ S    G+APY  VLTHG
Sbjct: 602 LEDAQNFPGLAGIRRKVDGGADTVMYLEGSDQHRGWFHSSLLESCGTRGRAPYDVVLTHG 661

Query: 597 FTVDGKGRKMSKSIGNVIAPQQVTNKLGADILRLWVAATDYSGEMTVSDEILNRSADAYR 656
           FT+D +GRKMSKS+GN   P +V    GADILRLWV ATDY+ +  +  EIL    + YR
Sbjct: 662 FTLDEQGRKMSKSLGNTTDPAKVIASSGADILRLWVCATDYADDQRIGPEILKNVVETYR 721

Query: 657 RIRNTARFLLANLNGFDPKNDLVAVEDMVALDRWAVRRAAALQQEIIEAYEQYNFHIVTQ 716
           ++RN+ R++L  L+ +  +++ VA  DM  L+R  + + A     +  AY ++++  V  
Sbjct: 722 KLRNSIRWMLGTLHHYH-RDEAVAFADMPELERLMLHQLAEQSATVRAAYAEFDYKTVVA 780

Query: 717 KLMQFCSIELGSFYLDIIKDRQYTAKQEGHARRSCQSALFHIAEAMVRWIAPVLSFTADE 776
            L  F + EL +FY DI KD  Y       AR++  + +  I +A+++W+APVLSFTADE
Sbjct: 781 SLAAFMNTELSAFYFDIRKDTLYCDPPSSLARKAALTTIDIICDAILKWLAPVLSFTADE 840

Query: 777 VWQLLPGQRDAYVFTQEWYQGLQSITLDTDLSDAY---WENLLTVRNEVNKVIEQARRDK 833
            W +     +  V     +  L  + L     DA    W  +  VR  V   +E  R  K
Sbjct: 841 AWSMYRPDAEPSV-----HLTLFPLDLGEYRDDALAKKWTLIRAVRRVVTGALEVERAAK 895

Query: 834 RVGGSLEAEVTLFADATLTEQLTHIGDELRFVLLTSEAKVLPLVDATSDAVET----ELA 889
           R+G SLEA   ++        +  +  +   + +TS A V  L    +   +     ELA
Sbjct: 896 RIGSSLEASPMIYLPEAFMGDIFDV--DWAEICITSNAMVEILRGNDTPPADAFRLPELA 953

Query: 890 SLKLVVNATTAEKCERCWHHREEVGTIEAHPTLCHR 925
            + +VV      KC R W     VG+   +P +  R
Sbjct: 954 DVAVVVERAQGTKCARSWKILSSVGSDAEYPDVSPR 989