Pairwise Alignments

Query, 164 a.a., type IV pilus biogenesis protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 178 a.a., prepilin-type N-terminal cleavage/methylation domain from Pseudomonas stutzeri RCH2

 Score = 57.4 bits (137), Expect = 1e-13
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 18/168 (10%)

Query: 5   SKGFTLVELMVTIAIAALLLSVGVPSFTAIYEATRSANEMQKINDLFAFARNQAVNYGAT 64
           ++GFT +EL+VT+ + A+ ++V VP+FTA  ++ R    + ++     FAR+ A+N    
Sbjct: 11  NQGFTFIELIVTLTVLAISIAVAVPAFTATLDSVRERTLLDQLLADIHFARSTAINRRRP 70

Query: 65  VTVCPYAATPCG-NDWTKGFSVYIENNGAKKVLKVIDGFSSKDTISLTGPT--------- 114
           V++C    T  G  +W+    ++ + NG       +D   S    S+ G           
Sbjct: 71  VSICTGYGTCSGETNWSGPVFIFDDLNGN----GALDDGDSPLRASMIGSNYQWSWSNFR 126

Query: 115 -DKTVNFTPDGLV-STETSIIYCPSGESDGSKSIKISTSGLIKEGSDN 160
               + F PDG   S   S + C  G +   K + I+ +G +K  S N
Sbjct: 127 KQPHLTFKPDGTTHSLNGSFVLCRRGMA--LKKVVINITGRVKLESPN 172