Pairwise Alignments

Query, 164 a.a., type IV pilus biogenesis protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 183 a.a., GspH/FimT family pseudopilin from Dyella japonica UNC79MFTsu3.2

 Score = 48.9 bits (115), Expect = 5e-11
 Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 11/159 (6%)

Query: 6   KGFTLVELMVTIAIAALLLSVGVPSFTAIYEATRSANEMQKINDLFAFARNQAVNYGATV 65
           +G TLVE ++ +AIAA+L  +G+PS   +  +        ++  +   AR  AV  G   
Sbjct: 12  RGTTLVEQILVVAIAAVLACIGLPSLRRLAASGELRQAQTELIAVLNHARTLAVQAGRVA 71

Query: 66  TVCPYA-------ATPCGNDWTKGFSVYIENNGAKKVLKVIDGFSSKDTISL-TGPTDKT 117
             CP             G DW  G     E +G  +    +   +    + + +    ++
Sbjct: 72  LACPTRDGAHCSDEADWGGDWLVGLRG--ERSGQLEGAPGLRRSNPSRQLRIRSAQGRRS 129

Query: 118 VNFTPDGLV-STETSIIYCPSGESDGSKSIKISTSGLIK 155
           V F PDG    +  +++ C  G+   + S+K+S +G ++
Sbjct: 130 VQFQPDGSAGGSNVTLLICHRGDDSRALSVKVSNAGRVR 168