Pairwise Alignments

Query, 429 a.a., NADH dehydrogenase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 431 a.a., NADH dehydrogenase, FAD-containing subunit from Pseudomonas stutzeri RCH2

 Score =  343 bits (879), Expect = 8e-99
 Identities = 192/429 (44%), Positives = 254/429 (59%), Gaps = 5/429 (1%)

Query: 5   RIVIVGGGAAGLALASKLGRKLGGSDVVDVCLIDKSPIHIWKPKLHEVAVGVIDQSIEGL 64
           RIVIVGGGA GL LA++LGR LG      + L+D +  HIWKP LHEVA G ++ S + L
Sbjct: 4   RIVIVGGGAGGLELATRLGRTLGKRGRARITLVDANLTHIWKPLLHEVAAGSLNSSADEL 63

Query: 65  LYRDHGLKNGYRYLRGEIEQCDPDTKTIRLAAVYSDSGELLLEPRQIEYDFLVLALGGVS 124
            Y      N + +  G +   D   K IRL A   + G  L+  R + YD L++A+G  +
Sbjct: 64  NYVAQAKWNHFEFQMGRMAGLDRANKCIRLEATRDEFGVELVPSRSLSYDTLIIAVGSTT 123

Query: 125 NSFNTLGAEQHCIFLDSLDNANLFHQKLLDALLQLNE---TQEKVSIGIVGAGATGVELA 181
           N F TLGA +HCIFLD+ + A  FH++LL   ++ +        +S+ IVGAGATGVELA
Sbjct: 124 NDFGTLGAAEHCIFLDTREQAERFHRQLLSHYMKAHAGEGASSDISMAIVGAGATGVELA 183

Query: 182 AELHHVIESVKEYGYLNISKHHLDVHLIEASPKILPQLPERVSARAQAVLDKIGIRLHIG 241
           AEL H  + +  YG   I    + + LIEA PK+LP LPER+S      L  +G+ +  G
Sbjct: 184 AELLHAAKELAAYGLDGIKPEDVKITLIEAGPKVLPALPERISQPVHQTLLNLGVTVLTG 243

Query: 242 VQVKEVTRDGFITQDGDMIKASLKVWAAGVKGPKAFQNFSKLPITPRNQVEVDACMRVKG 301
             V EVT +G  T+ G  + ASLKVWAAG+K P        L     NQ+ V   ++   
Sbjct: 244 AAVSEVTAEGLQTKQGQFVPASLKVWAAGIKAPAFLHELDGLETNRINQLVVHPTLQSTR 303

Query: 302 QQDIYAIGDCALLIL-DSGQPVPPRAQAAAQMADTLYENIVNRLQGKVEKPFVYKDYGSL 360
             +I+A GDCA     DS + VPPRAQAA Q A  L  +I NRL+GK    + YKDYGSL
Sbjct: 304 DDNIFAFGDCAACPQPDSDRNVPPRAQAAHQQASMLARSIRNRLEGKPLPTYRYKDYGSL 363

Query: 361 VSLSRFSAVGNLMGNLRSGTFFVEGHIARLMYISLYQRHLASLYGWFSAIIYRIAQKLLK 420
           +SLS FSAVGNLMGNL +G   +EG +AR+ YISLY+ H  +LYG    ++  +  KL +
Sbjct: 364 ISLSSFSAVGNLMGNL-TGNVMLEGWLARMFYISLYRMHQIALYGVPRTLLMMLGDKLSR 422

Query: 421 WQRPKLKLH 429
              P+LKLH
Sbjct: 423 TTEPRLKLH 431