Pairwise Alignments

Query, 429 a.a., NADH dehydrogenase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 452 a.a., NADH dehydrogenase (ubiquinone) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  128 bits (321), Expect = 4e-34
 Identities = 116/409 (28%), Positives = 188/409 (45%), Gaps = 35/409 (8%)

Query: 5   RIVIVGGGAAGLALASKLGRKLGGSDVVDVCLIDKSPIHIWKPKLHEVAVGVIDQSIEGL 64
           R+VIVGGG  GL  A +L R    S  VDV L+D++  H + P L++VA   I+   E +
Sbjct: 18  RVVIVGGGFGGLWAARRLAR----SGRVDVVLVDRNNYHTFLPLLYQVAAAEIEP--EQI 71

Query: 65  LYRDHGLKNGYRYLRGEIEQCDPDTKTIRLAAVYSDSGELLLEPRQIEYDFLVLALGGVS 124
            Y   G+  G +  R  +   D          +++D  +       I YD L+LA G ++
Sbjct: 72  AYPLRGVFRGQQ--RVSVALADVRGVDTARRVLHTDGPD-------IPYDHLILAPGSLT 122

Query: 125 NSFNTLGAEQHCIFLDSLDNANLFHQKLLDALLQLNETQEK------VSIGIVGAGATGV 178
           + F   GA ++   L SL++A      +L    + + T++       ++  +VG G TGV
Sbjct: 123 SFFGVPGATENAYTLKSLEDAVRLRNHILACFERASLTEDPARRAALLTFTVVGGGPTGV 182

Query: 179 ELAAELHHVIESVKEYGYLNIS-KHHLDVHLIEASPKILPQLPERVSARAQAVLDKIGIR 237
           E A  L  ++ +     +  ++ K    + L+EA+  +L   PE++   A+  L  +G+ 
Sbjct: 183 EFAGALAELVRTPLARDFPELAGKTPPRIVLLEAADGLLTGFPEQLRTYARDRLALMGVE 242

Query: 238 LHIGVQVKEVTRDGFITQDGDMIKASLKVWAAGVKGPKAFQNFSKLPITPRNQVEVDACM 297
           +     V EV        DG  I      W AGV+G         LP+    +V V   +
Sbjct: 243 VRTRAGVAEVGPTDVRLGDGLRIATCTVAWTAGVRGHDVAAAMG-LPVGRGGRVPVLPTL 301

Query: 298 RVKGQQDIYAIGDCALLILDSGQPVPPRAQAAAQMADTLYENIVNRLQGKVEKPFVYKDY 357
           +V G  +I  +GD AL     GQ  P  A  A Q       N++  L+G   KPF Y+D 
Sbjct: 302 QVDGHPEIQVVGDLAL---PDGQNPPMIAPNATQQGRHAAANVLRLLKGGTAKPFRYRDK 358

Query: 358 GSLVSLSRFSAVGNLMGNLRSGTFFVEGHIARLMYISLYQRHLASLYGW 406
           G++ ++ R +AV      +R G F   G  A ++++ +   HLA L G+
Sbjct: 359 GAMATIGRQAAV------VRLGRFAFSGLWAWVLWLFV---HLAYLIGF 398