Pairwise Alignments

Query, 324 a.a., methyl-accepting chemotaxis protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score = 70.1 bits (170), Expect = 1e-16
 Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 4/123 (3%)

Query: 206 RTQQATGEIQKV----QSRVAETDSVMQASQTLSNQGVNRSEEIKLVLSKVTDLVSNISN 261
           RTQQ+T EI+ +    QS   +  S+M  S+ L+   V  S +    L  +T  VS+I  
Sbjct: 518 RTQQSTVEIETLVAALQSGTRQVSSIMLNSRELTVSSVTLSRQAGTSLGSITQTVSSIQA 577

Query: 262 MNIEVSHAAQEQTCVTEAISRTLNDLANVSGSASLDSEHLAQSSERLFHQGERLRALVTS 321
           MN +++ AA+EQ+ V E ISR++ ++ +VS   +  SE  A SS  L   G +L+ +V+ 
Sbjct: 578 MNQQIAAAAEEQSAVAEEISRSIVNVRDVSEQTASASEETAASSVELARLGGQLQTMVSR 637

Query: 322 FRL 324
           FR+
Sbjct: 638 FRI 640



 Score = 34.7 bits (78), Expect = 7e-06
 Identities = 29/132 (21%), Positives = 62/132 (46%), Gaps = 7/132 (5%)

Query: 157 DEAKFAKSFGAVSHTNHHQVPAQLKETEAAVTVISQLSASANDIVINTIRTQQATGEIQK 216
           D  K ++    +      Q  AQ + T+   T+++ +      I+   I T+Q T  +++
Sbjct: 264 DIVKISEDMYKLQLDRRDQESAQARTTQITCTLLAIILG----IIAAVIITRQITRPLRE 319

Query: 217 ---VQSRVAETDSVMQASQTLSNQGVNRSEEIKLVLSKVTDLVSNISNMNIEVSHAAQEQ 273
              V  R+A  D     + T S++     + I+ + + + +L+  I +  ++++ AA+E 
Sbjct: 320 TLAVVDRIASGDLTQTLAVTRSDELGVLQQGIQRMGTTLRELIGGIRDSVVQIASAAEEL 379

Query: 274 TCVTEAISRTLN 285
           + VTE  S  +N
Sbjct: 380 SAVTEQTSAGVN 391