Pairwise Alignments

Query, 324 a.a., methyl-accepting chemotaxis protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 538 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score = 56.6 bits (135), Expect = 1e-12
 Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 31/196 (15%)

Query: 106 KPKRNAEEA---LAGTVDVFWSMTSKVLEETMFPVRIPLFKGLLGNRLLIIRKTDEAKFA 162
           K K  A+E+   +  T+    S+  K+    +   R+    G +G+ L +IR   E    
Sbjct: 325 KVKGQAQESQSLMTSTLKQTESLVDKLKAAELTTARLGAASGQIGSILDVIRAIAE---- 380

Query: 163 KSFGAVSHTNHHQVPAQLKETEAAV------TVISQLSASANDIVINTIRTQQATGEIQK 216
                   TN   + A ++   A         V  ++ A AN       RTQQ+T EIQK
Sbjct: 381 -------QTNLLALNAAIEAARAGAHGRGFAVVADEVRALAN-------RTQQSTNEIQK 426

Query: 217 V----QSRVAETDSVMQASQTLSNQGVNRSEEIKLVLSKVTDLVSNISNMNIEVSHAAQE 272
           +    Q+ + +  +   A+QTLS    +++ +    +  +  LV++I+++N +++ A +E
Sbjct: 427 IISEIQAGIGDVTASNSANQTLSESLQSQARQAGASMDAILSLVAHINDINTQLASATEE 486

Query: 273 QTCVTEAISRTLNDLA 288
           Q+ VTE I+R +++++
Sbjct: 487 QSLVTEEINRNISNIS 502



 Score = 26.9 bits (58), Expect = 0.001
 Identities = 22/113 (19%), Positives = 53/113 (46%), Gaps = 3/113 (2%)

Query: 174 HQVPAQLKETEAAVTVISQLSASANDIVINTIRTQ--QATGEIQKVQSRVAETDSVMQAS 231
           +++   + E +A +  ++  S SAN  +  ++++Q  QA   +  + S VA  + +    
Sbjct: 422 NEIQKIISEIQAGIGDVTA-SNSANQTLSESLQSQARQAGASMDAILSLVAHINDINTQL 480

Query: 232 QTLSNQGVNRSEEIKLVLSKVTDLVSNISNMNIEVSHAAQEQTCVTEAISRTL 284
            + + +    +EEI   +S +++ +      N    HAA     ++ A+++ L
Sbjct: 481 ASATEEQSLVTEEINRNISNISEQMQLAVESNEGNRHAAGSLQSISRALAKAL 533



 Score = 25.4 bits (54), Expect = 0.003
 Identities = 14/79 (17%), Positives = 42/79 (53%)

Query: 243 EEIKLVLSKVTDLVSNISNMNIEVSHAAQEQTCVTEAISRTLNDLANVSGSASLDSEHLA 302
           ++IK +  ++TD    +S      + ++++    TE+++  ++ +   S   + +++  A
Sbjct: 261 KDIKPMGDELTDDAQALSQAVETANRSSEQIHRETESVAAAIHQMLATSQEMAHNTQQAA 320

Query: 303 QSSERLFHQGERLRALVTS 321
            S+ ++  Q +  ++L+TS
Sbjct: 321 DSASKVKGQAQESQSLMTS 339