Pairwise Alignments

Query, 324 a.a., methyl-accepting chemotaxis protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 495 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  211 bits (537), Expect = 3e-59
 Identities = 128/203 (63%), Positives = 142/203 (69%), Gaps = 34/203 (16%)

Query: 151 LIIRKTDEAKFAKSFGAVSHTNHHQVPAQLKETEAAVTVISQLSASANDIVINTI----- 205
           L I +    + A+S  +VS     Q+  + +  +  V VIS ++   N + +N       
Sbjct: 298 LAITRQLAGELARSAQSVS-----QLQQETQRIDEVVVVISSIAEQTNLLALNAAIEAAR 352

Query: 206 --------------------RTQQATGEIQK----VQSRVAETDSVMQASQTLSNQGVNR 241
                               RTQQATGEIQK    VQSRVAET +VMQ+SQTLSNQGVNR
Sbjct: 353 AGEQGRGFAVVADEVRSLASRTQQATGEIQKMIQQVQSRVAETVNVMQSSQTLSNQGVNR 412

Query: 242 SEEIKLVLSKVTDLVSNISNMNIEVSHAAQEQTCVTEAISRTLNDLANVSGSASLDSEHL 301
           SEEIKLVLSKVTDLVSNISNMNIEVSHAAQEQTCVTEAISRTLNDLANVSGSASLDSEHL
Sbjct: 413 SEEIKLVLSKVTDLVSNISNMNIEVSHAAQEQTCVTEAISRTLNDLANVSGSASLDSEHL 472

Query: 302 AQSSERLFHQGERLRALVTSFRL 324
           AQSSERLFHQGERLR LVTSFRL
Sbjct: 473 AQSSERLFHQGERLRTLVTSFRL 495



 Score = 65.5 bits (158), Expect = 3e-15
 Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 15/126 (11%)

Query: 162 AKSFGAVSHTNHHQVPAQLKETEAAVTVISQLSASANDIVINTIRTQQATGEIQK-VQSR 220
           AK+ G +S +N+ +V AQLKETEAAVT ++QLSASAN++ IN  RT  A  +  + V   
Sbjct: 231 AKALGTLSQSNNQRVQAQLKETEAAVTAVTQLSASANEVAINAKRTADAATQADRAVDDG 290

Query: 221 VAETDSVMQASQTLS-------------NQGVNRSEEIKLVLSKVTDLVSNIS-NMNIEV 266
             + DS +  ++ L+              Q   R +E+ +V+S + +  + ++ N  IE 
Sbjct: 291 QRQFDSGLAITRQLAGELARSAQSVSQLQQETQRIDEVVVVISSIAEQTNLLALNAAIEA 350

Query: 267 SHAAQE 272
           + A ++
Sbjct: 351 ARAGEQ 356