Pairwise Alignments

Query, 435 a.a., N-acetyl glucosamine transporter, NagP (from data) from Shewanella oneidensis MR-1

Subject, 418 a.a., fucose permease (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  136 bits (342), Expect = 1e-36
 Identities = 114/434 (26%), Positives = 198/434 (45%), Gaps = 42/434 (9%)

Query: 13  LPMAIVAALFFILGFATWLNGSLMPYLKQILQLNPFQASLILFSFYIAVTFTALPSAWVI 72
           +P+A+V +LFF+   ++ L  +++  L +  +LN F+AS    ++++A     +P A  +
Sbjct: 8   IPLALVFSLFFLWAISSNLLPTMIRQLMKTCELNTFEASFTETAYWLAYFIFPIPIAMFM 67

Query: 73  RKVGYKNGMALGMGVMMIAGLLFIPAAKTQVFALFLFAQLVMGAGQTLLQTAVNPYVVRL 132
           ++  YK G+  G+ +  + GLLF PAA  + +  +L    ++  G   L+TA NPYV  L
Sbjct: 68  KRYSYKAGIIFGLLLAAVGGLLFFPAAMLKEYWAYLCIFFIIATGMCFLETAANPYVTVL 127

Query: 133 GPEESAAARVSVMGILNKGAGVIAPLVFSALILDSFK--------DRIGTTLTQVQIDEM 184
           G  E+A  R+++    N     IA +  S LIL            D  G     +Q++  
Sbjct: 128 GAPETAPRRLNLAQSFNGLGAFIAAMFLSKLILSGTHYTRETLPVDYPGGWQAYIQLE-- 185

Query: 185 ANGLVLPYLGMAVFIGILALAVKKSPLPELSNE--DEVADHTDKSQIKAALSHPNLALGV 242
            + + LPYL +A+ +  +A+    S LP++ +E  +  +   +K      L   +L  GV
Sbjct: 186 TDAMKLPYLILALLLLAIAVVFVFSKLPKIGDEGAEPASGKKEKLIDFDVLKRSHLRWGV 245

Query: 243 LALFVYVAVEVIAGDTIGTFALS---LGIDHYGVMTSYTMVCMVLGYILGILLIPRVISQ 299
           +A F Y   +         +  +   L  D         M+  +LG  +G  L+ +   Q
Sbjct: 246 IAQFFYNGGQTAINSLFLVYCCTYAGLPEDTATTFFGLYMLAFLLGRWIGTGLMVKFRPQ 305

Query: 300 PTALMISAILGLLLTLGILFGDNNSYAIANLLL----VPFGGVALPDTLLLIAFLGLANA 355
                     G+LL           YA+ N+LL    + +GG+     +L I+F     +
Sbjct: 306 ----------GMLLV----------YALMNILLCGVVMLWGGMIGLYAMLAISFF---MS 342

Query: 356 IVWPAVWPLALSGMGKLTSTGSALLIMGIAGGAFGPVSWGLMSSATDMGQQGGYMVMLPC 415
           I++P  + LAL G+G  T +GSA L+M I G A  P          +      Y + + C
Sbjct: 343 IMYPTQFSLALKGLGNQTKSGSAFLVMAIVGNACLPQLTAYFMHVNEHIYYVAYGIPMIC 402

Query: 416 YLFILFYAVKGHKM 429
           + F  +Y  KG+K+
Sbjct: 403 FAFCAYYGWKGYKV 416