Pairwise Alignments

Query, 382 a.a., drug resistance transporter, Bcr/CflA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 381 a.a., multidrug resistance protein D (RefSeq) from Shewanella amazonensis SB2B

 Score =  342 bits (878), Expect = 8e-99
 Identities = 184/387 (47%), Positives = 254/387 (65%), Gaps = 13/387 (3%)

Query: 1   MNIKPPLWLAVLLMMFPQIMETIYSPALPDIAEHFAVPISAAAQTLSVYFVAFAIGVFCW 60
           M  KP LWL +LL+MFPQI+ET+YSPAL  I++ FAV  + A+QTLS+YF+AFA+GV  W
Sbjct: 1   MKTKPSLWLMLLLLMFPQIVETLYSPALVSISQAFAVSDTEASQTLSIYFIAFALGVAVW 60

Query: 61  GRLADVIGRRKAMLAGLVCYAIGSAFALLVSDFSLLLMARVLSAFGAAVGSVITQTMMRD 120
           G +AD  GRR  ML GL  Y I +  AL    F++L++AR  SAFG AVGS++TQTM+RD
Sbjct: 61  GIVADAWGRRPTMLLGLSVYGISALVALQTDSFAVLMLARACSAFGIAVGSIVTQTMLRD 120

Query: 121 SYSGEELAKVFSVMGMSFGISPVIGLLLGSVLSAFWGYQGVFVVLMSSAIVLLFLSVKSL 180
           S+ G+ L KVFS+MG+   +SPVIG+  G  L    G+  VF +L+  A+VLL   V+ L
Sbjct: 121 SFDGDALGKVFSLMGLGIALSPVIGMFTGGQLVLLGGHGAVFTLLLFMALVLLGCCVRFL 180

Query: 181 PETKP-------AHTQTIAIGELAIKMLSDRGIIKNTLLVAAFNLMWFSYFSLAPFMFEA 233
           PET P          Q+  +  LA +ML+D  I ++ LLVA +N+  FSY+ L  F F  
Sbjct: 181 PETFPETVTRTQGTNQSFPLSALAKRMLADWHIWRSALLVAIYNIGLFSYYQLGGFAFAR 240

Query: 234 QGLSTLIFGMSGLLLGFGAFLGSYFNQVLLGRCCTSPRLIRLASSIALVGGVGIWLLQST 293
            GL+  +FG SGLLLG G+ +GSY N  L+    +  R +  A+++ L+G V + LLQ  
Sbjct: 241 LGLTPEVFGYSGLLLGLGSCVGSYLNSRLIANEVSLQRRLLGAATLLLLGAVSLCLLQ-- 298

Query: 294 FIGLNNVYFLAPMLLIVIAYGIAIPNILSSALAGYRTYAGSAGALFGLFYYILLGAGLGV 353
                +V+F+ PM L+V+A+G+AIPN+LS AL+ Y+ YAGSAGAL GL YY+L+GAGL +
Sbjct: 299 ----GSVWFVLPMCLVVMAFGVAIPNVLSMALSDYKMYAGSAGALLGLMYYLLIGAGLAL 354

Query: 354 VGLINHLGGVITLAALFCTVLSMSRAR 380
            GLI HLG V+   A+    +++   R
Sbjct: 355 AGLIEHLGWVLLGCAVAAWAVTLIHRR 381